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2WB1
Asym. Unit
Info
Asym.Unit (2.2 MB)
Biol.Unit 1, α-C (1.1 MB)
Biol.Unit 1 (1.1 MB)
Biol.Unit 2, α-C (1.1 MB)
Biol.Unit 2 (1.1 MB)
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(1)
Title
:
THE COMPLETE STRUCTURE OF THE ARCHAEAL 13-SUBUNIT DNA-DIRECTED RNA POLYMERASE
Authors
:
Y. Korkhin, U. M. Unligil, O. Littlefield, P. J. Nelson, D. I. Stuart, P. S. D. Bell, N. G. A. Abrescia
Date
:
19 Feb 09 (Deposition) - 19 May 09 (Release) - 04 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.52
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z
Biol. Unit 1: A,B,C,D,E,F,G,H,K,L,N,P,Q (1x)
Biol. Unit 2: I,J,M,O,R,S,T,U,V,W,X,Y,Z (1x)
Keywords
:
Rna-Polymerase, Multi-Subunit Enzyme, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Korkhin, U. M. Unligil, O. Littlefield, P. J. Nelson, D. I. Stuart, P. B. Sigler, S. D. Bell, N. G. A. Abrescia
Evolution Of Complex Rna Polymerase: The Complete Archaeal Rna Polymerase Structure
Plos Biol. V. 7 E102 2009
[
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: FE3-S4 CLUSTER (F3Sa)
1b: FE3-S4 CLUSTER (F3Sb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
F3S
2
Ligand/Ion
FE3-S4 CLUSTER
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
ZN
10
Ligand/Ion
ZINC ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:58 , THR A:60 , CYS A:61 , CYS A:68 , HIS A:71
BINDING SITE FOR RESIDUE ZN A1880
02
AC2
SOFTWARE
LYS A:142 , ALA A:143 , GLN A:144 , VAL A:145 , CYS A:146
BINDING SITE FOR RESIDUE ZN A1881
03
AC3
SOFTWARE
ASP A:456 , ASP A:458 , ASP A:460
BINDING SITE FOR RESIDUE MG A1882
04
AC4
SOFTWARE
CYS B:1064 , CYS B:1067 , CYS B:1082 , ILE B:1084
BINDING SITE FOR RESIDUE ZN B2123
05
AC5
SOFTWARE
CYS D:183 , VAL D:187 , PHE D:188 , CYS D:203 , LEU D:205 , CYS D:206 , GLU D:207 , CYS D:209 , ILE D:219
BINDING SITE FOR RESIDUE F3S D1265
06
AC6
SOFTWARE
CYS N:7 , THR N:9 , CYS N:10 , CYS N:44 , CYS N:45
BINDING SITE FOR RESIDUE ZN N1065
07
AC7
SOFTWARE
CYS O:7 , CYS O:10 , CYS O:44 , CYS O:45
BINDING SITE FOR RESIDUE ZN O1065
08
AC8
SOFTWARE
CYS P:9 , THR P:12 , CYS P:26 , TYR P:28 , CYS P:29
BINDING SITE FOR RESIDUE ZN P1049
09
AC9
SOFTWARE
CYS R:1064 , CYS R:1067 , CYS R:1082 , ILE R:1084
BINDING SITE FOR RESIDUE ZN R2123
10
BC1
SOFTWARE
CYS S:183 , VAL S:187 , PHE S:188 , CYS S:203 , LEU S:205 , CYS S:206 , GLU S:207 , CYS S:209 , ILE S:219
BINDING SITE FOR RESIDUE F3S S1265
11
BC2
SOFTWARE
CYS W:58 , THR W:60 , CYS W:61 , CYS W:68 , HIS W:71
BINDING SITE FOR RESIDUE ZN W1880
12
BC3
SOFTWARE
CYS W:98 , CYS W:101 , GLN W:144 , VAL W:145 , CYS W:146
BINDING SITE FOR RESIDUE ZN W1881
13
BC4
SOFTWARE
ASP W:456 , ASP W:458 , ASP W:460
BINDING SITE FOR RESIDUE MG W1882
14
BC5
SOFTWARE
CYS X:9 , THR X:12 , CYS X:26 , CYS X:29
BINDING SITE FOR RESIDUE ZN X1049
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_2wb1E01 (E:1-81)
1b: CATH_2wb1T01 (T:1-81)
2a: CATH_2wb1H00 (H:9-82)
2b: CATH_2wb1Z00 (Z:9-82)
3a: CATH_2wb1N00 (N:1-64)
3b: CATH_2wb1O00 (O:1-64)
4a: CATH_2wb1E02 (E:82-177)
4b: CATH_2wb1T02 (T:82-177)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
DNA-directed RNA polymerase ii subunit; domain 1
(30)
Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobusshibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286.
(2)
1a
2wb1E01
E:1-81
1b
2wb1T01
T:1-81
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Eukaryotic RPB6 RNA polymerase subunit
(77)
Homologous Superfamily
:
[code=3.90.940.20, no name defined]
(58)
Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobusshibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286.
(2)
2a
2wb1H00
H:9-82
2b
2wb1Z00
Z:9-82
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobusshibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286.
(2)
3a
2wb1N00
N:1-64
3b
2wb1O00
O:1-64
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobusshibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286. Sulfolobus shibatae. Organism_taxid: 2286.
(2)
4a
2wb1E02
E:82-177
4b
2wb1T02
T:82-177
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Pfam Domains
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