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2WA2
Asym. Unit
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Asym.Unit (89 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (47 KB)
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(1)
Title
:
STRUCTURE OF THE METHYLTRANSFERASE DOMAIN FROM MODOC VIRUS, A FLAVIVIRUS WITH NO KNOWN VECTOR (NKV)
Authors
:
A. M. Jansson, P. Johansson, T. A. Jones
Date
:
02 Feb 09 (Deposition) - 04 Aug 09 (Release) - 04 Aug 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, S-Adenosyl-L- Methionine, Virion, Membrane, Flavivirus, Modoc Virus, N7-Methyltransferase, 2'-O-Methyltransferase, Transmembrane, Envelope Protein, Methyltransferase
(Keyword Search:
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Reference
:
A. M. Jansson, E. Jakobsson, P. Johansson, V. Lantez, B. Coutard, X. De Lamballerie, T. Unge, T. A. Jones
Structure Of The Methyltransferase Domain From The Modoc Virus, A Flavivirus With No Known Vector.
Acta Crystallogr. , Sect. D V. 65 796 2009
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: S-ADENOSYLMETHIONINE (SAMa)
1b: S-ADENOSYLMETHIONINE (SAMb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
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No.
Name
Count
Type
Full Name
1
SAM
2
Ligand/Ion
S-ADENOSYLMETHIONINE
2
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:82 , CYS A:83 , GLY A:84 , GLY A:86 , SER A:87 , TRP A:88 , THR A:105 , LEU A:106 , HIS A:111 , VAL A:131 , ASP A:132 , VAL A:133 , THR A:134 , ASP A:147 , ILE A:148 , SO4 A:1249 , HOH A:2031 , HOH A:2033 , HOH A:2115 , HOH A:2116 , HOH A:2117
BINDING SITE FOR RESIDUE SAM A1248
2
AC2
SOFTWARE
SER B:57 , GLY B:59 , GLY B:82 , CYS B:83 , GLY B:84 , SER B:87 , TRP B:88 , THR B:105 , LEU B:106 , HIS B:111 , VAL B:131 , ASP B:132 , VAL B:133 , ASP B:147 , ILE B:148 , SO4 B:1269 , HOH B:2056 , HOH B:2065 , HOH B:2177 , HOH B:2178
BINDING SITE FOR RESIDUE SAM B1267
3
AC3
SOFTWARE
ARG B:38 , ARG B:42 , ARG B:85 , HOH B:2043 , HOH B:2179
BINDING SITE FOR RESIDUE SO4 B1268
4
AC4
SOFTWARE
ILE B:148 , GLY B:149 , GLU B:150 , ARG B:161 , SAM B:1267 , HOH B:2180
BINDING SITE FOR RESIDUE SO4 B1269
5
AC5
SOFTWARE
ILE A:148 , GLY A:149 , GLU A:150 , ARG A:161 , SAM A:1248 , HOH A:2118
BINDING SITE FOR RESIDUE SO4 A1249
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2wa2a_ (A:)
1b: SCOP_d2wa2b_ (B:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Modoc virus [TaxId: 64300]
(2)
1a
d2wa2a_
A:
1b
d2wa2b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2wa2A00 (A:5-247)
1b: CATH_2wa2B00 (B:8-266)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Modoc virus. Organism_taxid: 64300.
(2)
1a
2wa2A00
A:5-247
1b
2wa2B00
B:8-266
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_FtsJ_2wa2B01 (B:55-228)
1b: PFAM_FtsJ_2wa2B02 (B:55-228)
2a: PFAM_Flavi_NS5_2wa2B03 (B:253-266)
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Clan
:
NADP_Rossmann
(1239)
Family
:
FtsJ
(23)
Modoc virus
(2)
1a
FtsJ-2wa2B01
B:55-228
1b
FtsJ-2wa2B02
B:55-228
Clan
:
RdRP
(210)
Family
:
Flavi_NS5
(21)
Modoc virus
(2)
2a
Flavi_NS5-2wa2B03
B:253-266
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Asym.Unit (89 KB)
Header - Asym.Unit
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