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2W9L
Asym. Unit
Info
Asym.Unit (577 KB)
Biol.Unit 1 (561 KB)
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(1)
Title
:
CANINE ADENOVIRUS TYPE 2 FIBRE HEAD IN COMPLEX WITH CAR DOMAIN D1 AND SIALIC ACID
Authors
:
E. Seiradake, D. Henaff, H. Wodrich, O. Billet, M. Perreau, C. Hippert, F. Mennechet, G. Schoehn, H. Lortat-Jacob, H. Dreja, S. Ibanes, V. Kal J. P. Wang, R. W. Finberg, S. Cusack, E. J. Kremer
Date
:
26 Jan 09 (Deposition) - 17 Mar 09 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.91
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,X,Y,Z
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,X,Y,Z (1x)
Keywords
:
Immunoglobulin Domain, Car, Knob, Fiber, Fibre, Cav-2, Canine, Complex, Erythrocyte, Sialic Acid, Glycoprotein, Fiber Head, Adenovirus, Fibre Head, Lipoprotein, Fiber Protein, Cell Junction, Cell Adhesion, Red Blood Cell, Coxsackievirus, Phosphoprotein, Membrane, Secreted, Receptor, Palmitate, Domain D1, Host-Virus Interaction, Virus-Receptor Complex, Transmembrane, Cell Membrane, Sialyl-Lactose, Tight Junction, Phosphorylation, Hemagglutination
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Seiradake, D. Henaff, H. Wodrich, O. Billet, M. Perreau, C. Hippert F. Mennechet, G. Schoehn, H. Lortat-Jacob, H. Dreja, S. Ibanes, V. Kalatzis, J. P. Wang, R. W. Finberg, S. Cusack, E. J. Kremer
The Cell Adhesion Molecule "Car" And Sialic Acid On Human Erythrocytes Influence Adenovirus In Vivo Biodistribution.
Plos Pathog. V. 5 277 2009
[
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
1c: BETA-D-GALACTOSE (GALc)
1d: BETA-D-GALACTOSE (GALd)
1e: BETA-D-GALACTOSE (GALe)
2a: BETA-D-GULOPYRANOSE (GL0a)
2b: BETA-D-GULOPYRANOSE (GL0b)
2c: BETA-D-GULOPYRANOSE (GL0c)
2d: BETA-D-GULOPYRANOSE (GL0d)
2e: BETA-D-GULOPYRANOSE (GL0e)
2f: BETA-D-GULOPYRANOSE (GL0f)
2g: BETA-D-GULOPYRANOSE (GL0g)
3a: O-SIALIC ACID (SIAa)
3b: O-SIALIC ACID (SIAb)
3c: O-SIALIC ACID (SIAc)
3d: O-SIALIC ACID (SIAd)
3e: O-SIALIC ACID (SIAe)
3f: O-SIALIC ACID (SIAf)
3g: O-SIALIC ACID (SIAg)
3h: O-SIALIC ACID (SIAh)
3i: O-SIALIC ACID (SIAi)
3j: O-SIALIC ACID (SIAj)
3k: O-SIALIC ACID (SIAk)
3l: O-SIALIC ACID (SIAl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
5
Ligand/Ion
BETA-D-GALACTOSE
2
GL0
7
Ligand/Ion
BETA-D-GULOPYRANOSE
3
SIA
12
Ligand/Ion
O-SIALIC ACID
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN C:378 , TYR C:408 , GLN C:415 , SER C:416 , GLN C:417 , SER C:419 , ASN C:435 , ARG C:515
BINDING SITE FOR CHAIN C OF POLYSACCHARIDE RESIDUES 1543 TO 1544
02
AC2
SOFTWARE
ASN D:378 , TYR D:408 , GLN D:415 , SER D:416 , GLN D:417 , PHE D:418 , SER D:419 , ASN D:435 , ARG D:515
BINDING SITE FOR CHAIN D OF POLYSACCHARIDE RESIDUES 1543 TO 1544
03
AC3
SOFTWARE
ASN E:378 , TYR E:408 , SER E:416 , GLN E:417 , PHE E:418 , SER E:419 , ASN E:435 , ARG E:515
BINDING SITE FOR CHAIN E OF POLYSACCHARIDE RESIDUES 1543 TO 1544
04
AC4
SOFTWARE
ASN F:378 , TYR F:408 , GLN F:415 , SER F:416 , GLN F:417 , PHE F:418 , SER F:419 , ASN F:435 , ARG F:515
BINDING SITE FOR CHAIN F OF POLYSACCHARIDE RESIDUES 1543 TO 1544
05
AC5
SOFTWARE
ILE H:377 , TYR H:408 , SER H:416 , GLN H:417 , PHE H:418 , SER H:419 , ASN H:435 , ARG H:515
BINDING SITE FOR CHAIN H OF POLYSACCHARIDE RESIDUES 1543 TO 1544
06
AC6
SOFTWARE
ILE I:377 , ASN I:378 , TYR I:408 , SER I:416 , GLN I:417 , SER I:419 , ASN I:435 , ARG I:515 , HOH I:708
BINDING SITE FOR CHAIN I OF POLYSACCHARIDE RESIDUES 1543 TO 1544
07
AC7
SOFTWARE
ASN L:378 , TYR L:408 , SER L:416 , GLN L:417 , PHE L:418 , SER L:419 , ASN L:435 , ARG L:515
BINDING SITE FOR CHAIN L OF POLYSACCHARIDE RESIDUES 1543 TO 1544
08
AC8
SOFTWARE
TYR M:408 , GLN M:415 , SER M:416 , GLN M:417 , PHE M:418 , SER M:419 , ASN M:435 , ARG M:515
BINDING SITE FOR CHAIN M OF POLYSACCHARIDE RESIDUES 1543 TO 1544
09
AC9
SOFTWARE
ASN C:520 , TYR N:408 , SER N:416 , GLN N:417 , SER N:419 , ASN N:435 , ARG N:515
BINDING SITE FOR CHAIN N OF POLYSACCHARIDE RESIDUES 1543 TO 1544
10
BC1
SOFTWARE
ASN Q:378 , TYR Q:408 , GLN Q:415 , SER Q:416 , GLN Q:417 , SER Q:419 , ASN Q:435 , ARG Q:515
BINDING SITE FOR CHAIN Q OF POLYSACCHARIDE RESIDUES 1543 TO 1544
11
BC2
SOFTWARE
ASN R:378 , TYR R:408 , SER R:416 , GLN R:417 , PHE R:418 , SER R:419 , ASN R:435 , ARG R:515
BINDING SITE FOR CHAIN R OF POLYSACCHARIDE RESIDUES 1543 TO 1544
12
BC3
SOFTWARE
ASN S:378 , TYR S:408 , SER S:416 , GLN S:417 , PHE S:418 , SER S:419 , ASN S:435 , ARG S:515
BINDING SITE FOR CHAIN S OF RESIDUES SIA S1543 AND GL0 S1544
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(3, 29)
Info
All Exons
Exon 1.4b (A:19-70 | B:20-70 | G:17-70 | J:17...)
Exon 1.5 (A:71-135 | B:71-136 | G:71-139 | J...)
Exon 1.6 (- | - | G:139-139 | J:139-139 | - ...)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.4b
2: Boundary 1.4b/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000284878
1a
ENSE00001356018
chr21:
18884700-18885490
791
CXAR_HUMAN
1-15
15
0
-
-
1.4b
ENST00000284878
4b
ENSE00001370254
chr21:
18919345-18919511
167
CXAR_HUMAN
15-70
56
12
A:19-70
B:20-70
G:17-70
J:17-70
K:16-70
O:19-70 (gaps)
P:17-70
T:19-70
V:17-70
X:17-70
Y:19-70
Z:19-70
52
51
54
54
55
52
54
52
54
54
52
52
1.5
ENST00000284878
5
ENSE00001016957
chr21:
18924067-18924271
205
CXAR_HUMAN
71-139
69
12
A:71-135
B:71-136
G:71-139
J:71-139
K:71-138
O:71-139
P:71-139
T:71-137
V:71-137
X:71-139
Y:71-137
Z:71-135
65
66
69
69
68
69
69
67
67
69
67
65
1.6
ENST00000284878
6
ENSE00001016954
chr21:
18931294-18931449
156
CXAR_HUMAN
139-191
53
5
-
-
G:139-139
J:139-139
-
O:139-139
P:139-139
-
-
X:139-139
-
-
-
-
1
1
-
1
1
-
-
1
-
-
1.7
ENST00000284878
7
ENSE00001016953
chr21:
18933020-18933142
123
CXAR_HUMAN
191-232
42
0
-
-
1.8
ENST00000284878
8
ENSE00001016956
chr21:
18933656-18933794
139
CXAR_HUMAN
232-278
47
0
-
-
1.9f
ENST00000284878
9f
ENSE00001918181
chr21:
18937746-18942418
4673
CXAR_HUMAN
278-365
88
0
-
-
[
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SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d2w9la_ (A:)
1b: SCOP_d2w9lo_ (O:)
1c: SCOP_d2w9lp_ (P:)
1d: SCOP_d2w9lt_ (T:)
1e: SCOP_d2w9lv_ (V:)
1f: SCOP_d2w9lx_ (X:)
1g: SCOP_d2w9ly_ (Y:)
1h: SCOP_d2w9lz_ (Z:)
1i: SCOP_d2w9lb_ (B:)
1j: SCOP_d2w9lg_ (G:)
1k: SCOP_d2w9lj_ (J:)
1l: SCOP_d2w9lk_ (K:)
2a: SCOP_d2w9lc_ (C:)
2b: SCOP_d2w9ld_ (D:)
2c: SCOP_d2w9le_ (E:)
2d: SCOP_d2w9lf_ (F:)
2e: SCOP_d2w9lh_ (H:)
2f: SCOP_d2w9li_ (I:)
2g: SCOP_d2w9ll_ (L:)
2h: SCOP_d2w9lm_ (M:)
2i: SCOP_d2w9ln_ (N:)
2j: SCOP_d2w9lq_ (Q:)
2k: SCOP_d2w9lr_ (R:)
2l: SCOP_d2w9ls_ (S:)
View:
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Coxsackie virus and adenovirus receptor (Car), domain 1
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d2w9la_
A:
1b
d2w9lo_
O:
1c
d2w9lp_
P:
1d
d2w9lt_
T:
1e
d2w9lv_
V:
1f
d2w9lx_
X:
1g
d2w9ly_
Y:
1h
d2w9lz_
Z:
1i
d2w9lb_
B:
1j
d2w9lg_
G:
1k
d2w9lj_
J:
1l
d2w9lk_
K:
Fold
:
Virus attachment protein globular domain
(47)
Superfamily
:
Virus attachment protein globular domain
(47)
Family
:
Adenovirus fiber protein knob domain
(27)
Protein domain
:
automated matches
(13)
Canine adenovirus 2 [TaxId: 10514]
(3)
2a
d2w9lc_
C:
2b
d2w9ld_
D:
2c
d2w9le_
E:
2d
d2w9lf_
F:
2e
d2w9lh_
H:
2f
d2w9li_
I:
2g
d2w9ll_
L:
2h
d2w9lm_
M:
2i
d2w9ln_
N:
2j
d2w9lq_
Q:
2k
d2w9lr_
R:
2l
d2w9ls_
S:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2w9lA00 (A:19-135)
1b: CATH_2w9lB00 (B:20-136)
1c: CATH_2w9lZ00 (Z:19-135)
1d: CATH_2w9lO00 (O:19-139)
1e: CATH_2w9lT00 (T:19-137)
1f: CATH_2w9lY00 (Y:19-137)
1g: CATH_2w9lV00 (V:17-137)
1h: CATH_2w9lG00 (G:17-139)
1i: CATH_2w9lJ00 (J:17-139)
1j: CATH_2w9lK00 (K:16-138)
1k: CATH_2w9lP00 (P:17-139)
1l: CATH_2w9lX00 (X:17-139)
View:
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Topologies
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Canine adenovirus 2. Organism_taxid: 10514.
(2)
1a
2w9lA00
A:19-135
1b
2w9lB00
B:20-136
1c
2w9lZ00
Z:19-135
1d
2w9lO00
O:19-139
1e
2w9lT00
T:19-137
1f
2w9lY00
Y:19-137
1g
2w9lV00
V:17-137
1h
2w9lG00
G:17-139
1i
2w9lJ00
J:17-139
1j
2w9lK00
K:16-138
1k
2w9lP00
P:17-139
1l
2w9lX00
X:17-139
[
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_V_set_2w9lZ01 (Z:19-135)
1b: PFAM_V_set_2w9lZ02 (Z:19-135)
1c: PFAM_V_set_2w9lZ03 (Z:19-135)
1d: PFAM_V_set_2w9lZ04 (Z:19-135)
1e: PFAM_V_set_2w9lZ05 (Z:19-135)
1f: PFAM_V_set_2w9lZ06 (Z:19-135)
1g: PFAM_V_set_2w9lZ07 (Z:19-135)
1h: PFAM_V_set_2w9lZ08 (Z:19-135)
1i: PFAM_V_set_2w9lZ09 (Z:19-135)
1j: PFAM_V_set_2w9lZ10 (Z:19-135)
1k: PFAM_V_set_2w9lZ11 (Z:19-135)
1l: PFAM_V_set_2w9lZ12 (Z:19-135)
View:
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)
Clan
:
Ig
(577)
Family
:
V-set
(144)
Homo sapiens (Human)
(61)
1a
V-set-2w9lZ01
Z:19-135
1b
V-set-2w9lZ02
Z:19-135
1c
V-set-2w9lZ03
Z:19-135
1d
V-set-2w9lZ04
Z:19-135
1e
V-set-2w9lZ05
Z:19-135
1f
V-set-2w9lZ06
Z:19-135
1g
V-set-2w9lZ07
Z:19-135
1h
V-set-2w9lZ08
Z:19-135
1i
V-set-2w9lZ09
Z:19-135
1j
V-set-2w9lZ10
Z:19-135
1k
V-set-2w9lZ11
Z:19-135
1l
V-set-2w9lZ12
Z:19-135
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