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2W97
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (71 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EIF4E BOUND TO GLYCEROL AND EIF4G1 PEPTIDE
Authors
:
C. J. Brown, C. S. Verma, M. D. Walkinshaw, D. P. Lane
Date
:
22 Jan 09 (Deposition) - 31 Mar 10 (Release) - 31 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.29
Chains
:
Asym. Unit : A,B,E,F
Biol. Unit 1: A,B,E,F (1x)
Keywords
:
Protein Biosynthesis, Initiation Factor, Translation Regulation, Translation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. J. Brown, C. S. Verma, M. D. Walkinshaw, D. P. Lane
Crystallization Of Eif4E Complexed With Eif4Gi Peptide And Glycerol Reveals Distinct Structural Differences Around The Cap-Binding Site.
Cell Cycle V. 8 1905 2009
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: [[(2R,3S,4R,5R)-5-(6-AMINO-3-METHY... (MGOa)
3a: TRIETHYLENE GLYCOL (PGEa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
MGO
1
Ligand/Ion
[[(2R,3S,4R,5R)-5-(6-AMINO-3-METHYL-4-OXO-5H-IMIDAZO[4,5-C]PYRIDIN-1-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL]PHOSPHONO HYDROGEN PHOSPHATE
3
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
4
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:56 , MET A:101 , TRP A:102 , GLU A:103 , ARG A:157 , LYS A:162 , SER A:207 , GLY A:208 , HOH A:2022 , HOH A:2040 , HOH A:2076 , HOH A:2077 , HOH A:2078 , HOH A:2079 , HOH A:2080 , HOH A:2081 , GLU B:103
BINDING SITE FOR RESIDUE MGO A1218
2
AC2
SOFTWARE
ASP A:96 , GLY A:97 , ASN A:118 , LYS A:119 , GLN A:120 , ASP A:147 , VAL A:149 , HOH A:2082
BINDING SITE FOR RESIDUE PGE A1219
3
AC3
SOFTWARE
ARG A:42 , LYS A:65 , LYS A:119
BINDING SITE FOR RESIDUE SO4 A1220
4
AC4
SOFTWARE
GLU A:171 , ARG A:173 , GLU A:174
BINDING SITE FOR RESIDUE SO4 A1221
5
AC5
SOFTWARE
ARG B:42 , LYS B:65 , LYS B:119
BINDING SITE FOR RESIDUE SO4 B1218
6
AC6
SOFTWARE
GLU B:171 , ARG B:173 , GLU B:174 , HOH B:2061
BINDING SITE FOR RESIDUE SO4 B1219
7
AC7
SOFTWARE
ARG B:112 , HIS B:200 , THR B:203
BINDING SITE FOR RESIDUE GOL B1220
8
AC8
SOFTWARE
THR A:116 , GLN A:121 , ILE A:195
BINDING SITE FOR RESIDUE GOL A1222
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IF4E (A:90-113,B:90-113)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IF4E
PS00813
Eukaryotic initiation factor 4E signature.
IF4E_HUMAN
90-113
2
A:90-113
B:90-113
[
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]
Exons
(1, 2)
Info
All Exons
Exon 1.13 (E:621-633 | F:622-633)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.12/1.13
2: Boundary 1.13/1.14
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000346169
1a
ENSE00001957337
chr3:
184032283-184032462
180
IF4G1_HUMAN
-
0
0
-
-
1.2e
ENST00000346169
2e
ENSE00001364164
chr3:
184033277-184033333
57
IF4G1_HUMAN
-
0
0
-
-
1.2f
ENST00000346169
2f
ENSE00002150918
chr3:
184033551-184033644
94
IF4G1_HUMAN
1-20
20
0
-
-
1.2i
ENST00000346169
2i
ENSE00001640019
chr3:
184033920-184034006
87
IF4G1_HUMAN
21-49
29
0
-
-
1.4b
ENST00000346169
4b
ENSE00001660690
chr3:
184035109-184035285
177
IF4G1_HUMAN
50-108
59
0
-
-
1.5b
ENST00000346169
5b
ENSE00001754377
chr3:
184035505-184035604
100
IF4G1_HUMAN
109-142
34
0
-
-
1.7c
ENST00000346169
7c
ENSE00002187218
chr3:
184037477-184037589
113
IF4G1_HUMAN
142-179
38
0
-
-
1.8f
ENST00000346169
8f
ENSE00002192598
chr3:
184038418-184038510
93
IF4G1_HUMAN
180-210
31
0
-
-
1.9b
ENST00000346169
9b
ENSE00001731325
chr3:
184038715-184038781
67
IF4G1_HUMAN
211-233
23
0
-
-
1.10g
ENST00000346169
10g
ENSE00001669160
chr3:
184039070-184039891
822
IF4G1_HUMAN
233-507
275
0
-
-
1.11
ENST00000346169
11
ENSE00001609185
chr3:
184040150-184040238
89
IF4G1_HUMAN
507-536
30
0
-
-
1.12
ENST00000346169
12
ENSE00001719210
chr3:
184040332-184040518
187
IF4G1_HUMAN
537-599
63
0
-
-
1.13
ENST00000346169
13
ENSE00001656080
chr3:
184040609-184040742
134
IF4G1_HUMAN
599-643
45
2
E:621-633
F:622-633
13
12
1.14
ENST00000346169
14
ENSE00001783634
chr3:
184040871-184041029
159
IF4G1_HUMAN
644-696
53
0
-
-
1.15b
ENST00000346169
15b
ENSE00001615721
chr3:
184041196-184041381
186
IF4G1_HUMAN
697-758
62
0
-
-
1.16
ENST00000346169
16
ENSE00001678763
chr3:
184041568-184041765
198
IF4G1_HUMAN
759-824
66
0
-
-
1.17c
ENST00000346169
17c
ENSE00001769552
chr3:
184041989-184042135
147
IF4G1_HUMAN
825-873
49
0
-
-
1.18b
ENST00000346169
18b
ENSE00001788274
chr3:
184042666-184042902
237
IF4G1_HUMAN
874-952
79
0
-
-
1.19b
ENST00000346169
19b
ENSE00001705319
chr3:
184043057-184043161
105
IF4G1_HUMAN
953-987
35
0
-
-
1.19d
ENST00000346169
19d
ENSE00001595277
chr3:
184043268-184043427
160
IF4G1_HUMAN
988-1041
54
0
-
-
1.20a
ENST00000346169
20a
ENSE00001651286
chr3:
184043639-184043739
101
IF4G1_HUMAN
1041-1074
34
0
-
-
1.21
ENST00000346169
21
ENSE00001632341
chr3:
184044315-184044417
103
IF4G1_HUMAN
1075-1109
35
0
-
-
1.22b
ENST00000346169
22b
ENSE00001746928
chr3:
184044669-184044771
103
IF4G1_HUMAN
1109-1143
35
0
-
-
1.23b
ENST00000346169
23b
ENSE00001711150
chr3:
184045004-184045236
233
IF4G1_HUMAN
1143-1221
79
0
-
-
1.24a
ENST00000346169
24a
ENSE00001672897
chr3:
184045374-184045492
119
IF4G1_HUMAN
1221-1260
40
0
-
-
1.24d
ENST00000346169
24d
ENSE00001757656
chr3:
184045618-184045790
173
IF4G1_HUMAN
1261-1318
58
0
-
-
1.25c
ENST00000346169
25c
ENSE00001596715
chr3:
184046419-184046544
126
IF4G1_HUMAN
1318-1360
43
0
-
-
1.25e
ENST00000346169
25e
ENSE00001717841
chr3:
184046697-184046778
82
IF4G1_HUMAN
1360-1387
28
0
-
-
1.26a
ENST00000346169
26a
ENSE00001597508
chr3:
184049054-184049152
99
IF4G1_HUMAN
1388-1420
33
0
-
-
1.26d
ENST00000346169
26d
ENSE00001690366
chr3:
184049260-184049394
135
IF4G1_HUMAN
1421-1465
45
0
-
-
1.27b
ENST00000346169
27b
ENSE00001666158
chr3:
184049516-184049597
82
IF4G1_HUMAN
1466-1493
28
0
-
-
1.27e
ENST00000346169
27e
ENSE00001690919
chr3:
184049734-184049874
141
IF4G1_HUMAN
1493-1540
48
0
-
-
1.28g
ENST00000346169
28g
ENSE00001687057
chr3:
184052515-184053141
627
IF4G1_HUMAN
1540-1599
60
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_IF4E_2w97B01 (B:38-200)
1b: PFAM_IF4E_2w97B02 (B:38-200)
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Clans
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: IF4E]
(10)
Family
:
IF4E
(10)
Homo sapiens (Human)
(7)
1a
IF4E-2w97B01
B:38-200
1b
IF4E-2w97B02
B:38-200
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Sidechain
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Chain E
Chain F
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Asym.Unit (77 KB)
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