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2W90
Asym. Unit
Info
Asym.Unit (176 KB)
Biol.Unit 1 (169 KB)
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(1)
Title
:
GEOBACILLUS STEAROTHERMOPHILUS 6-PHOSPHOGLUCONATE DEHYDROGENASE WITH BOUND 6-PHOSPHOGLUCONATE
Authors
:
S. Cameron, V. P. Martini, J. Iulek, W. N. Hunter
Date
:
20 Jan 09 (Deposition) - 07 Apr 09 (Release) - 16 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
6Pdh, Geobacillus, Dehydrogenase, Phsophogluconate, Oxidoreductase
(Keyword Search:
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Reference
:
S. Cameron, V. P. Martini, J. Iulek, W. N. Hunter
Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase, Complexed With 6-Phosphogluconate.
Acta Crystallogr. , Sect. F V. 65 450 2009
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: 6-PHOSPHOGLUCONIC ACID (6PGa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
3a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
3b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
6PG
1
Ligand/Ion
6-PHOSPHOGLUCONIC ACID
2
SO4
2
Ligand/Ion
SULFATE ION
3
TRS
2
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:102 , SER A:128 , GLY A:129 , GLY A:130 , LYS A:182 , HIS A:185 , ASN A:186 , GLU A:189 , TYR A:190 , GLN A:259 , LYS A:260 , ARG A:287 , HOH A:2109 , HOH A:2177 , HOH A:2371 , HOH A:2372 , HOH A:2373 , HOH A:2374 , HOH A:2375 , HOH A:2376 , ARG B:446 , HIS B:452
BINDING SITE FOR RESIDUE 6PG A 500
2
AC2
SOFTWARE
ARG A:446 , HIS A:452 , HOH A:2348 , HOH A:2352 , HOH A:2377 , GLY B:258 , HOH B:2224
BINDING SITE FOR RESIDUE TRS A 501
3
AC3
SOFTWARE
GLY A:258 , GLN A:259 , LYS A:260 , ARG B:446 , HIS B:452
BINDING SITE FOR RESIDUE TRS A 502
4
AC4
SOFTWARE
ARG A:446 , HIS A:452 , TYR B:190 , GLN B:259 , LYS B:260 , ARG B:287 , HOH B:2173 , HOH B:2174 , HOH B:2373 , HOH B:2374
BINDING SITE FOR RESIDUE SO4 B 500
5
AC5
SOFTWARE
SER B:128 , GLY B:129 , GLY B:130 , LYS B:182 , HIS B:185 , GLU B:189 , ILE B:366 , HOH B:2135 , HOH B:2174 , HOH B:2373 , HOH B:2375
BINDING SITE FOR RESIDUE SO4 B 501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2w90a2 (A:176-469)
1b: SCOP_d2w90b2 (B:176-469)
2a: SCOP_d2w90a1 (A:0-175)
2b: SCOP_d2w90b1 (B:-1-175)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Superfamily
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Family
:
automated matches
(50)
Protein domain
:
automated matches
(50)
Geobacillus stearothermophilus [TaxId: 1422]
(2)
1a
d2w90a2
A:176-469
1b
d2w90b2
B:176-469
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Geobacillus stearothermophilus [TaxId: 1422]
(2)
2a
d2w90a1
A:0-175
2b
d2w90b1
B:-1-175
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2w90B01 (B:-1-179)
1b: CATH_2w90A01 (A:0-179)
2a: CATH_2w90A02 (A:180-435)
2b: CATH_2w90B02 (B:180-435)
3a: CATH_2w90A03 (A:436-469)
3b: CATH_2w90B03 (B:436-469)
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Organisms
(
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(10)
1a
2w90B01
B:-1-179
1b
2w90A01
A:0-179
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(60)
Homologous Superfamily
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(59)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(2)
2a
2w90A02
A:180-435
2b
2w90B02
B:180-435
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
6-Phosphogluconate Dehydrogenase, domain 3
(20)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(2)
3a
2w90A03
A:436-469
3b
2w90B03
B:436-469
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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