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2W8O
Asym. Unit
Info
Asym.Unit (82 KB)
Biol.Unit 1 (871 KB)
Biol.Unit 2 (291 KB)
Biol.Unit 3 (147 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE REDUCED FORM OF HUMAN SSADH
Authors
:
Y. -G. Kim, K. -J. Kim
Date
:
19 Jan 09 (Deposition) - 09 Jun 09 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (12x)
Biol. Unit 2: A (4x)
Biol. Unit 3: A (2x)
Keywords
:
Mitochondrion, Oxidoreductase, Transit Peptide, Ssa, Nad, Ssadh, Polymorphism, Mitochondria, Disease Mutation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. -G. Kim, S. Lee, O. -S. Kwon, S. -Y. Park, S. -J. Lee, B. -J. Park, K. -J. Kim
Redox-Switch Modulation Of Human Ssadh By Dynamic Catalytic Loop.
Embo J. V. 28 959 2009
[
close entry info
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
SO4
8
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:368 , VAL A:370 , HIS A:413
BINDING SITE FOR RESIDUE SO4 A 701
02
AC2
SOFTWARE
GLN A:349 , ASP A:450 , THR A:451 , GLU A:452
BINDING SITE FOR RESIDUE SO4 A 702
03
AC3
SOFTWARE
SER A:285 , THR A:288
BINDING SITE FOR RESIDUE SO4 A 703
04
AC4
SOFTWARE
LEU A:51 , ARG A:68 , SER A:83 , ALA A:85
BINDING SITE FOR RESIDUE SO4 A 704
05
AC5
SOFTWARE
ARG A:350 , LYS A:448
BINDING SITE FOR RESIDUE SO4 A 705
06
AC6
SOFTWARE
TYR A:175 , LYS A:518
BINDING SITE FOR RESIDUE SO4 A 706
07
AC7
SOFTWARE
TYR A:159 , PHE A:206 , ARG A:334 , SER A:498 , SO4 A:708
BINDING SITE FOR RESIDUE SO4 A 707
08
AC8
SOFTWARE
TYR A:159 , ARG A:213 , ARG A:334 , VAL A:341 , SER A:498 , PHE A:504 , SO4 A:707
BINDING SITE FOR RESIDUE SO4 A 708
09
AC9
SOFTWARE
GLY A:409
BINDING SITE FOR RESIDUE GOL A 801
10
BC1
SOFTWARE
ARG A:96 , ALA A:100 , ARG A:103 , ASN A:418
BINDING SITE FOR RESIDUE GOL A 802
[
close Site info
]
SAPs(SNPs)/Variants
(17, 17)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_026199 (C93F, chain A, )
02: VAR_026200 (G176R, chain A, )
03: VAR_016758 (H180Y, chain A, )
04: VAR_016759 (P182L, chain A, )
05: VAR_026201 (C223Y, chain A, )
06: VAR_026202 (T233M, chain A, )
07: VAR_026228 (A237S, chain A, )
08: VAR_026203 (N255S, chain A, )
09: VAR_026204 (G268E, chain A, )
10: VAR_026205 (N335K, chain A, )
11: VAR_069047 (N372S, chain A, )
12: VAR_026206 (P382L, chain A, )
13: VAR_026207 (P382Q, chain A, )
14: VAR_026229 (V406I, chain A, )
15: VAR_026208 (G409D, chain A, )
16: VAR_026209 (V487E, chain A, )
17: VAR_026210 (G533R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_026199
C
93
F
SSDH_HUMAN
Disease (SSADHD)
---
A
C
93
F
02
UniProt
VAR_026200
G
176
R
SSDH_HUMAN
Disease (SSADHD)
---
A
G
176
R
03
UniProt
VAR_016758
H
180
Y
SSDH_HUMAN
Polymorphism
2760118
A
H
180
Y
04
UniProt
VAR_016759
P
182
L
SSDH_HUMAN
Polymorphism
3765310
A
P
182
L
05
UniProt
VAR_026201
C
223
Y
SSDH_HUMAN
Disease (SSADHD)
---
A
C
223
Y
06
UniProt
VAR_026202
T
233
M
SSDH_HUMAN
Disease (SSADHD)
---
A
T
233
M
07
UniProt
VAR_026228
A
237
S
SSDH_HUMAN
Polymorphism
62621664
A
A
237
S
08
UniProt
VAR_026203
N
255
S
SSDH_HUMAN
Disease (SSADHD)
---
A
N
255
S
09
UniProt
VAR_026204
G
268
E
SSDH_HUMAN
Disease (SSADHD)
---
A
G
268
E
10
UniProt
VAR_026205
N
335
K
SSDH_HUMAN
Disease (SSADHD)
---
A
N
335
K
11
UniProt
VAR_069047
N
372
S
SSDH_HUMAN
Polymorphism
---
A
N
372
S
12
UniProt
VAR_026206
P
382
L
SSDH_HUMAN
Disease (SSADHD)
---
A
P
382
L
13
UniProt
VAR_026207
P
382
Q
SSDH_HUMAN
Disease (SSADHD)
---
A
P
382
Q
14
UniProt
VAR_026229
V
406
I
SSDH_HUMAN
Polymorphism
---
A
V
406
I
15
UniProt
VAR_026208
G
409
D
SSDH_HUMAN
Disease (SSADHD)
---
A
G
409
D
16
UniProt
VAR_026209
V
487
E
SSDH_HUMAN
Disease (SSADHD)
---
A
V
487
E
17
UniProt
VAR_026210
G
533
R
SSDH_HUMAN
Disease (SSADHD)
---
A
G
533
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:305-312)
2: ALDEHYDE_DEHYDR_CYS (A:333-344)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
SSDH_HUMAN
305-312
1
A:305-312
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
SSDH_HUMAN
333-344
1
A:333-344
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2w8oA01 (A:51-308,A:500-535)
2a: CATH_2w8oA02 (A:309-499)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Human (Homo sapiens)
(22)
1a
2w8oA01
A:51-308,A:500-535
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Human (Homo sapiens)
(22)
2a
2w8oA02
A:309-499
[
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]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Aldedh_2w8oA01 (A:69-530)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ALDH-like
(49)
Family
:
Aldedh
(45)
Homo sapiens (Human)
(21)
1a
Aldedh-2w8oA01
A:69-530
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Chain A
Asymmetric Unit 1
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Asym.Unit (82 KB)
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