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2W88
Asym. Unit
Info
Asym.Unit (56 KB)
Biol.Unit 1 (97 KB)
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(1)
Title
:
PLASTOCYANIN VARIANT WITH N-TERMINAL METHIONINE - OPEN STRUCTURE
Authors
:
P. B. Crowley, P. M. Matias, A. R. Khan
Date
:
14 Jan 09 (Deposition) - 27 Oct 09 (Release) - 26 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.89
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Protein Interactions, Transport, Cupredoxin, Self-Assembly, Metal-Binding, Electron Transport
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
P. B. Crowley, P. M. Matias, A. R. Khan, M. Roessle, D. I. Svergun
Metal-Mediated Self-Assembly Of A Beta-Sandwich Protein.
Chemistry V. 15 12672 2009
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CU
3
Ligand/Ion
COPPER (II) ION
2
ZN
7
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:39 , CYS A:89 , HIS A:92 , MET A:97
BINDING SITE FOR RESIDUE CU A 106
02
AC2
SOFTWARE
HIS A:61 , ASP B:44 , ASP B:45
BINDING SITE FOR RESIDUE ZN A 107
03
AC3
SOFTWARE
MET A:0 , GLU A:1 , HIS A:24 , ASP A:27
BINDING SITE FOR RESIDUE ZN A 108
04
AC4
SOFTWARE
HIS C:39 , CYS C:89 , HIS C:92 , MET C:97
BINDING SITE FOR RESIDUE CU B 106
05
AC5
SOFTWARE
ASP A:44 , ASP A:45 , HIS C:61
BINDING SITE FOR RESIDUE ZN B 107
06
AC6
SOFTWARE
MET C:0 , GLU C:1 , HIS C:24 , ASP C:27
BINDING SITE FOR RESIDUE ZN B 108
07
AC7
SOFTWARE
HIS B:39 , CYS B:89 , HIS B:92 , MET B:97
BINDING SITE FOR RESIDUE CU C 106
08
AC8
SOFTWARE
HIS B:61 , ASP C:44 , ASP C:45
BINDING SITE FOR RESIDUE ZN C 107
09
AC9
SOFTWARE
GLU B:1 , HIS B:24 , ASP B:27
BINDING SITE FOR RESIDUE ZN C 108
10
BC1
SOFTWARE
MET B:0
BINDING SITE FOR RESIDUE ZN C 109
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: COPPER_BLUE (A:82-97,B:82-97,C:82-97)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_BLUE
PS00196
Type-1 copper (blue) proteins signature.
PLAS_PHOLA
116-131
3
A:82-97
B:82-97
C:82-97
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2w88a_ (A:)
1b: SCOP_d2w88b_ (B:)
1c: SCOP_d2w88c_ (C:)
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Classes
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)
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Plastocyanin/azurin-like
(241)
Protein domain
:
Plastocyanin
(56)
Phormidium laminosum [TaxId: 32059]
(8)
1a
d2w88a_
A:
1b
d2w88b_
B:
1c
d2w88c_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2w88A00 (A:0-105)
1b: CATH_2w88B00 (B:0-105)
1c: CATH_2w88C00 (C:0-105)
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Classes
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Architectures
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Topologies
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)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Phormidium laminosum. Organism_taxid: 32059.
(3)
1a
2w88A00
A:0-105
1b
2w88B00
B:0-105
1c
2w88C00
C:0-105
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Copper_bind_2w88C01 (C:3-104)
1b: PFAM_Copper_bind_2w88C02 (C:3-104)
1c: PFAM_Copper_bind_2w88C03 (C:3-104)
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Clans
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Organisms
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)
(
)
Clan
:
CU_oxidase
(192)
Family
:
Copper-bind
(82)
Phormidium laminosum
(2)
1a
Copper-bind-2w88C01
C:3-104
1b
Copper-bind-2w88C02
C:3-104
1c
Copper-bind-2w88C03
C:3-104
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Asymmetric Unit 1
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