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2W7F
Asym. Unit
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Asym.Unit (78 KB)
Biol.Unit 1 (144 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF Y51FBSSHMT L-SER EXTERNAL ALDIMINE
Authors
:
V. Rajaram, B. S. Bhavani, S. Bisht, P. Kaul, V. Prakash, N. Appaji Rao, H. S. Savithri, M. R. N. Murthy
Date
:
22 Dec 08 (Deposition) - 18 Aug 10 (Release) - 18 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
One-Carbon Metabolism, Plp-Dependent Enzymes, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
B. S. Bhavani, V. Rajaram, S. Bisht, P. Kaul, V. Prakash, M. R. N. Murthy N. Appaji Rao, H. S. Savithri
Importance Of Tyrosine Residues Of Bacillus Stearothermophilus Serine Hydroxymethyltransferase In Cofactor Binding And L-Allo-Thr Cleavage.
Febs J. V. 275 4606 2008
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
1b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
3a: PHOSPHATE ION (PO4a)
4a: SERINE (SERa)
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No.
Name
Count
Type
Full Name
1
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
2
PLP
1
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
3
PO4
1
Ligand/Ion
PHOSPHATE ION
4
SER
1
Mod. Amino Acid
SERINE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:31 , PHE A:51 , GLU A:53 , TYR A:61 , HIS A:122 , HIS A:200 , ARG A:357 , PLP A:501 , HOH A:2088
BINDING SITE FOR RESIDUE SER A 601
2
AC2
SOFTWARE
PHE A:51 , GLU A:53 , SER A:93 , GLY A:94 , ALA A:95 , HIS A:122 , ALA A:171 , SER A:172 , ASP A:197 , ALA A:199 , HIS A:200 , THR A:223 , HIS A:225 , LYS A:226 , GLY A:257 , SER A:601 , HOH A:2088 , HOH A:2288 , HOH A:2426 , HOH A:2427 , HOH A:2428 , HOH A:2429 , HOH A:2430
BINDING SITE FOR RESIDUE PLP A 501
3
AC3
SOFTWARE
TYR A:152 , ARG A:156 , ILE A:186 , LEU A:322 , VAL A:387 , HOH A:2239 , HOH A:2242 , HOH A:2347 , HOH A:2431
BINDING SITE FOR RESIDUE MPD A 720
4
AC4
SOFTWARE
MET A:99 , PHE A:131 , TYR A:136 , HOH A:2432
BINDING SITE FOR RESIDUE MPD A 721
5
AC5
SOFTWARE
GLU A:371 , GLU A:375 , HOH A:2433 , HOH A:2434 , HOH A:2435
BINDING SITE FOR RESIDUE PO4 A 801
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2w7fa_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
Serine hydroxymethyltransferase
(50)
Bacillus stearothermophilus [TaxId: 1422]
(39)
1a
d2w7fa_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2w7fA02 (A:33-283)
2a: CATH_2w7fA01 (A:1-32,A:284-405)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(15)
1a
2w7fA02
A:33-283
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(15)
2a
2w7fA01
A:1-32,A:284-405
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SHMT_2w7fA01 (A:4-380)
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Clans
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Clan
:
PLP_aminotran
(240)
Family
:
SHMT
(45)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(38)
1a
SHMT-2w7fA01
A:4-380
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Chain A
Asymmetric Unit 1
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