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2W6T
Asym. Unit
Info
Asym.Unit (258 KB)
Biol.Unit 1 (128 KB)
Biol.Unit 2 (126 KB)
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(1)
Title
:
STRUCTURES OF P. AERUGINOSA FPVA BOUND TO HETEROLOGOUS PYOVERDINES: FPVA-PVD(DSM50106)-FE COMPLEX
Authors
:
J. Greenwald, M. Nader, H. Celia, C. Gruffaz, J. -M. Meyer, I. J. Schalk,
Date
:
19 Dec 08 (Deposition) - 12 May 09 (Release) - 28 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Receptor, Tonb Box, Transport, Siderophore, Cell Membrane, Ion Transport, Iron Transport, Outer Membrane, Tonb-Dependent Transporter, Membrane Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Greenwald, M. Nader, H. Celia, C. Gruffaz, V. Geoffroy, J. M. Meyer, I. J. Schalk, F. Pattus
Fpva Bound To Non-Cognate Pyoverdines: Molecular Basis Of Siderophore Recognition By An Iron Transporter.
Mol. Microbiol. V. 72 1246 2009
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Hetero Components
(8, 19)
Info
All Hetero Components
1a: D-SERINE (DSNa)
1b: D-SERINE (DSNb)
2a: FE (III) ION (FEa)
3a: N^5^-FORMYL-N^5^-HYDROXY-D-ORNITHI... (FH7a)
4a: N^5^-FORMYL-N^5^-HYDROXY-L-ORNITHI... (FHOa)
5a: 3,6,9,12,15-PENTAOXATRICOSAN-1-OL (N8Ea)
5b: 3,6,9,12,15-PENTAOXATRICOSAN-1-OL (N8Eb)
6a: L-ORNITHINE (ORNa)
7a: PHOSPHATE ION (PO4a)
7b: PHOSPHATE ION (PO4b)
7c: PHOSPHATE ION (PO4c)
7d: PHOSPHATE ION (PO4d)
7e: PHOSPHATE ION (PO4e)
7f: PHOSPHATE ION (PO4f)
7g: PHOSPHATE ION (PO4g)
7h: PHOSPHATE ION (PO4h)
7i: PHOSPHATE ION (PO4i)
7j: PHOSPHATE ION (PO4j)
8a: (1S)-1-CARBOXY-5-[(3-CARBOXYPROPAN... (PVEa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DSN
2
Mod. Amino Acid
D-SERINE
2
FE
1
Ligand/Ion
FE (III) ION
3
FH7
1
Mod. Amino Acid
N^5^-FORMYL-N^5^-HYDROXY-D-ORNITHINE
4
FHO
1
Mod. Amino Acid
N^5^-FORMYL-N^5^-HYDROXY-L-ORNITHINE
5
N8E
2
Ligand/Ion
3,6,9,12,15-PENTAOXATRICOSAN-1-OL
6
ORN
1
Mod. Amino Acid
L-ORNITHINE
7
PO4
10
Ligand/Ion
PHOSPHATE ION
8
PVE
1
Ligand/Ion
(1S)-1-CARBOXY-5-[(3-CARBOXYPROPANOYL)AMINO]-8,9-DIHYDROXY-1,2,3,4-TETRAHYDROPYRIMIDO[1,2-A]QUINOLIN-11-IUM
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:309
BINDING SITE FOR RESIDUE N8E A1816
02
AC2
SOFTWARE
ALA A:724 , LEU A:725 , TYR A:769 , ALA A:777 , SER A:778 , VAL A:779 , ARG A:805 , LEU A:807 , PHE A:809 , SER A:810 , THR A:811 , TYR B:769 , ALA B:777 , SER B:778 , ARG B:805 , PHE B:809 , SER B:810 , THR B:811
BINDING SITE FOR RESIDUE N8E A1817
03
AC3
SOFTWARE
HIS A:424 , PRO A:426 , LYS A:447 , LYS A:512 , TRP A:515
BINDING SITE FOR RESIDUE PO4 A1818
04
AC4
SOFTWARE
HIS B:424 , PRO B:426 , LYS B:447 , LYS B:512 , TRP B:515
BINDING SITE FOR RESIDUE PO4 B1818
05
AC5
SOFTWARE
ASN A:184 , ASP A:186 , ARG A:190 , ASN A:205 , LYS A:318 , ARG A:327
BINDING SITE FOR RESIDUE PO4 A1819
06
AC6
SOFTWARE
GLU A:142 , ASP A:143 , ARG A:174 , ASP A:178 , LYS A:271 , HIS A:280 , ARG A:812 , PO4 A:1822 , PO4 A:1823
BINDING SITE FOR RESIDUE PO4 A1820
07
AC7
SOFTWARE
ASN B:184 , ASP B:186 , ASP B:187 , ARG B:190 , LYS B:318 , ARG B:327
BINDING SITE FOR RESIDUE PO4 B1819
08
AC8
SOFTWARE
GLU B:142 , ARG B:174 , ASP B:178 , HIS B:280 , ARG B:310 , ARG B:812
BINDING SITE FOR RESIDUE PO4 B1820
09
AC9
SOFTWARE
HIS A:418 , ILE A:420 , LYS A:453
BINDING SITE FOR RESIDUE PO4 A1821
10
BC1
SOFTWARE
HIS B:418 , ILE B:420 , LYS B:453
BINDING SITE FOR RESIDUE PO4 B1821
11
BC2
SOFTWARE
GLU A:142 , ASP A:143 , LYS A:278 , ARG A:812 , ASP A:814 , PO4 A:1820
BINDING SITE FOR RESIDUE PO4 A1822
12
BC3
SOFTWARE
ARG A:174 , ASP A:178 , LYS A:271 , HIS A:280 , GLU A:282 , GLU A:294 , ARG A:812 , PO4 A:1820
BINDING SITE FOR RESIDUE PO4 A1823
13
BC4
SOFTWARE
ASN A:656 , PRO A:657 , ARG B:100 , TYR B:200 , ARG B:204 , ASN B:228 , GLY B:230 , TYR B:231 , TRP B:362 , SER B:363 , TRP B:391 , MET B:431 , GLY B:432 , GLN B:446 , TYR B:448 , TRP B:491 , TRP B:599 , TYR B:600 , PHE B:795 , TYR B:796
BINDING SITE FOR PYOVERDINE-CHROMOPHORE IRON(III) COMPLEX (CHAIN C RESIDUES 1 TO 12)
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: TONB_DEPENDENT_REC_2 (A:798-815,B:798-815)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TONB_DEPENDENT_REC_2
PS01156
TonB-dependent receptor proteins signature 2.
FPVA_PSEAE
798-815
2
A:798-815
B:798-815
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_TonB_dep_Rec_2w6tB01 (B:570-814)
1b: PFAM_TonB_dep_Rec_2w6tB02 (B:570-814)
2a: PFAM_Plug_2w6tB03 (B:161-265)
2b: PFAM_Plug_2w6tB04 (B:161-265)
3a: PFAM_STN_2w6tB05 (B:68-117)
3b: PFAM_STN_2w6tB06 (B:68-117)
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Clans
(
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(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
MBB
(97)
Family
:
TonB_dep_Rec
(26)
Pseudomonas aeruginosa
(10)
1a
TonB_dep_Rec-2w6tB01
B:570-814
1b
TonB_dep_Rec-2w6tB02
B:570-814
Clan
:
Ubiquitin
(279)
Family
:
Plug
(26)
Pseudomonas aeruginosa
(10)
2a
Plug-2w6tB03
B:161-265
2b
Plug-2w6tB04
B:161-265
Clan
:
no clan defined [family: STN]
(9)
Family
:
STN
(9)
Pseudomonas aeruginosa
(8)
3a
STN-2w6tB05
B:68-117
3b
STN-2w6tB06
B:68-117
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (258 KB)
Header - Asym.Unit
Biol.Unit 1 (128 KB)
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Biol.Unit 2 (126 KB)
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