PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2W4U
Asym. Unit
Info
Asym.Unit (1.3 MB)
Biol.Unit 1, α-C (1.3 MB)
Biol.Unit 1 (1.3 MB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE QUICK FROZEN AFTER A LENGTH STEP
Authors
:
S. Wu, J. Liu, M. C. Reedy, R. T. Tregear, H. Winkler, C. Franzini-Armstr H. Sasaki, C. Lucaveche, Y. E. Goldman, M. K. Reedy, K. A. Taylor
Date
:
02 Dec 08 (Deposition) - 25 Aug 10 (Release) - 19 Apr 17 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
35.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,0,1,2,3,4,5,6,7,8,9
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,0,1,2,3,4,5,6,7,8,9 (1x)
Keywords
:
Contractile Protein, Methylation, Atp-Binding, Isometric Contraction, Microtomy, Freeze Substitution, Muscle Protein, Calmodulin-Binding, Motor Protein, Actin-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Wu, J. Liu, M. C. Reedy, R. J. Perz-Edwards, R. T. Tregear, H. Winkler C. Franzini-Armstrong, H. Sasaki, C. Lucaveche, Y. E. Goldman, M. K. Reedy, K. A. Taylor
Structural Changes In Isometrically Contracting Insect Flight Muscle Trapped Following A Mechanical Perturbation.
Plos One V. 7 39422 2012
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(6, 84)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (0:16-51,3:16-51,6:16-51,9:16-51|0:...)
2: EF_HAND_1 (0:29-41,3:29-41,6:29-41,9:29-41|0:...)
3: ACTINS_1 (D:53-63,E:53-63,F:53-63,G:53-63,H:...)
4: ACTINS_ACT_LIKE (D:104-116,E:104-116,F:104-116,G:10...)
5: TROPOMYOSIN (A:225-233,B:225-233,U:225-233,V:22...)
6: ACTINS_2 (D:356-364,E:356-364,F:356-364,G:35...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
TNNC2_CHICK
18-53
54-89
94-129
130-163
16
0:16-51
3:16-51
6:16-51
9:16-51
0:52-87
3:52-87
6:52-87
9:52-87
0:92-127
3:92-127
6:92-127
9:92-127
0:128-161
3:128-161
6:128-161
9:128-161
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
TNNC2_CHICK
31-43
67-79
107-119
143-155
16
0:29-41
3:29-41
6:29-41
9:29-41
0:65-77
3:65-77
6:65-77
9:65-77
0:105-117
3:105-117
6:105-117
9:105-117
0:141-153
3:141-153
6:141-153
9:141-153
3
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
16
D:53-63
E:53-63
F:53-63
G:53-63
H:53-63
I:53-63
J:53-63
K:53-63
L:53-63
M:53-63
N:53-63
O:53-63
P:53-63
Q:53-63
R:53-63
S:53-63
4
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
16
D:104-116
E:104-116
F:104-116
G:104-116
H:104-116
I:104-116
J:104-116
K:104-116
L:104-116
M:104-116
N:104-116
O:104-116
P:104-116
Q:104-116
R:104-116
S:104-116
5
TROPOMYOSIN
PS00326
Tropomyosins signature.
TPM1_RABIT
232-240
4
A:225-233
B:225-233
U:225-233
V:225-233
6
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
16
D:356-364
E:356-364
F:356-364
G:356-364
H:356-364
I:356-364
J:356-364
K:356-364
L:356-364
M:356-364
N:356-364
O:356-364
P:356-364
Q:356-364
R:356-364
S:356-364
[
close PROSITE info
]
Exons
(4, 16)
Info
All Exons
Exon 1.1 (0:3-48 | 3:3-48 | 6:3-48 | 9:3-48)
Exon 1.2 (0:48-86 | 3:48-86 | 6:48-86 | 9:48...)
Exon 1.3 (0:86-132 | 3:86-132 | 6:86-132 | 9...)
Exon 1.4 (0:132-141 | 3:132-141 | 6:132-141 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSGALT00000011060
1
ENSGALE00000073521
Un_random:20732110-20732258
149
TNNC2_CHICK
1-50
50
4
0:3-48
3:3-48
6:3-48
9:3-48
46
46
46
46
1.2
ENSGALT00000011060
2
ENSGALE00000073519
Un_random:20732332-20732446
115
TNNC2_CHICK
50-88
39
4
0:48-86
3:48-86
6:48-86
9:48-86
39
39
39
39
1.3
ENSGALT00000011060
3
ENSGALE00000073522
Un_random:20732522-20732658
137
TNNC2_CHICK
88-134
47
4
0:86-132
3:86-132
6:86-132
9:86-132
47
47
47
47
1.4
ENSGALT00000011060
4
ENSGALE00000073520
Un_random:20732749-20732979
231
TNNC2_CHICK
134-143
10
4
0:132-141
3:132-141
6:132-141
9:132-141
10
10
10
10
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Chain U
Chain V
Chain W
Chain X
Chain Y
Chain Z
Chain 0
Chain 1
Chain 2
Chain 3
Chain 4
Chain 5
Chain 6
Chain 7
Chain 8
Chain 9
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.3 MB)
Header - Asym.Unit
Biol.Unit 1 (1.3 MB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2W4U
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
