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2W4L
Asym. Unit
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Asym.Unit (158 KB)
Biol.Unit 1 (152 KB)
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(1)
Title
:
HUMAN DCMP DEAMINASE
Authors
:
M. I. Siponen, M. Moche, C. H. Arrowsmith, H. Berglund, C. Bountra, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, A. Johansson, I. Johansson, T. Karlberg, T. Kotenyova, L. Lehtio, M. E. Nilsson, T. Nyman, C. Persson, J. Sagemark, H. Schuler, A. G. Thorsell, L. Tresaugues, S. Van Den Berg, J. Weigelt, M. Welin, M. Wikstrom, M. Wisniewska, P. Nordlund
Date
:
28 Nov 08 (Deposition) - 13 Jan 09 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Pyrimidine Metabolism, Nucleotide Biosynthesis, Zinc, Hexamer, Hydrolase, Metal-Binding, Phosphoprotein, Allosteric Enzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. I. Siponen, M. Moche, C. H. Arrowsmith, H. Berglund, C. Bountra, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, A. Johansson, I. Johansson, T. Karlberg, T. Kotenyova, L. Lehtio, M. E. Nilsson, T. Nyman, C. Persson, J. Sagemark, H. Schuler, A. G. Thorsell, L. Tresaugues, S. Van Den Berg, J. Weigelt, M. Welin, M. Wikstrom, M. Wisniewska, P. Nordlund
The Crystal Structure Of Human Dcmp Deaminase
To Be Published
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
ZN
6
Ligand/Ion
ZINC ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:84 , CYS A:110 , CYS A:113 , HOH A:2049
BINDING SITE FOR RESIDUE ZN A1170
2
AC2
SOFTWARE
HIS D:84 , CYS D:110 , CYS D:113 , HOH D:2036
BINDING SITE FOR RESIDUE ZN D1170
3
AC3
SOFTWARE
HIS E:84 , CYS E:110 , CYS E:113 , HOH E:2044
BINDING SITE FOR RESIDUE ZN E1174
4
AC4
SOFTWARE
HIS F:84 , CYS F:110 , CYS F:113 , HOH F:2051
BINDING SITE FOR RESIDUE ZN F1171
5
AC5
SOFTWARE
HIS B:84 , CYS B:110 , CYS B:113 , HOH B:2035
BINDING SITE FOR RESIDUE ZN B1171
6
AC6
SOFTWARE
HIS C:84 , CYS C:110 , CYS C:113 , HOH C:2037
BINDING SITE FOR RESIDUE ZN C1170
7
AC7
SOFTWARE
TYR A:132
BINDING SITE FOR RESIDUE CL A1171
8
AC8
SOFTWARE
LYS B:74
BINDING SITE FOR RESIDUE CL A1172
9
AC9
SOFTWARE
LYS F:74 , LEU F:75
BINDING SITE FOR RESIDUE CL E1175
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: CYT_DCMP_DEAMINASES_2 (A:14-145,B:14-145,C:14-145,D:14-14...)
2: CYT_DCMP_DEAMINASES_1 (A:84-117,B:84-117,C:84-117,D:84-11...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYT_DCMP_DEAMINASES_2
PS51747
Cytidine and deoxycytidylate deaminases domain profile.
DCTD_HUMAN
14-145
6
A:14-145
B:14-145
C:14-145
D:14-145
E:14-145
F:14-145
2
CYT_DCMP_DEAMINASES_1
PS00903
Cytidine and deoxycytidylate deaminases zinc-binding region signature.
DCTD_HUMAN
84-117
6
A:84-117
B:84-117
C:84-117
D:84-117
E:84-117
F:84-117
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2w4la_ (A:)
1b: SCOP_d2w4lb_ (B:)
1c: SCOP_d2w4lc_ (C:)
1d: SCOP_d2w4ld_ (D:)
1e: SCOP_d2w4le_ (E:)
1f: SCOP_d2w4lf_ (F:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Cytidine deaminase-like
(78)
Superfamily
:
Cytidine deaminase-like
(76)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2w4la_
A:
1b
d2w4lb_
B:
1c
d2w4lc_
C:
1d
d2w4ld_
D:
1e
d2w4le_
E:
1f
d2w4lf_
F:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_dCMP_cyt_deam_1_2w4lF01 (F:13-129)
1b: PFAM_dCMP_cyt_deam_1_2w4lF02 (F:13-129)
1c: PFAM_dCMP_cyt_deam_1_2w4lF03 (F:13-129)
1d: PFAM_dCMP_cyt_deam_1_2w4lF04 (F:13-129)
1e: PFAM_dCMP_cyt_deam_1_2w4lF05 (F:13-129)
1f: PFAM_dCMP_cyt_deam_1_2w4lF06 (F:13-129)
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Clan
:
CDA
(39)
Family
:
dCMP_cyt_deam_1
(28)
Homo sapiens (Human)
(2)
1a
dCMP_cyt_deam_1-2w4lF01
F:13-129
1b
dCMP_cyt_deam_1-2w4lF02
F:13-129
1c
dCMP_cyt_deam_1-2w4lF03
F:13-129
1d
dCMP_cyt_deam_1-2w4lF04
F:13-129
1e
dCMP_cyt_deam_1-2w4lF05
F:13-129
1f
dCMP_cyt_deam_1-2w4lF06
F:13-129
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Asym.Unit (158 KB)
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