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2W4F
Asym. Unit
Info
Asym.Unit (38 KB)
Biol.Unit 1 (34 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FIRST PDZ DOMAIN OF HUMAN SCRIB1
Authors
:
V. Hozjan, E. S. Pilka, A. K. Roos, W. W Yue, C. Phillips, J. Bray, C. Cooper, E. Salah, J. M. Elkins, J. R. C. Muniz, C. H. Arrowsmith, J. Weigelt, A. M. Edwards, F. Von Delft, C. Bountra, D. A. Doyle, U. Oppermann
Date
:
25 Nov 08 (Deposition) - 09 Dec 08 (Release) - 09 Dec 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Structural Protein, Phosphoprotein, Ubl Conjugation, Leucine-Rich Repeat, Alternative Splicing, Cytoplasm, Circletail, Coiled Coil, Polymorphism, Lap4, Crib1, Scrb1, Vartul, Membrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Hozjan, E. S. Pilka, A. K. Roos, W. W Yue, C. Phillips, J. Bray, C. Cooper, E. Salah, J. M. Elkins, J. R. C. Muniz, C. H. Arrowsmith, J. Weigelt, A. M. Edwards, F. Von Delft, C. Bountra, D. A. Doyle, U. Oppermann
Crystal Structure Of The First Pdz Domain Of Human Scrib1
To Be Published
[
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]
Hetero Components
(1, 3)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:743 , GLY A:744 , THR A:749 , HIS A:793 , ARG A:815 , HOH A:2082
BINDING SITE FOR RESIDUE EDO A1820
2
AC2
SOFTWARE
TYR A:751 , GLY A:777 , HIS A:793 , HIS A:794 , HOH A:2027 , HOH A:2085 , HOH A:2091 , HOH A:2092 , HOH A:2093
BINDING SITE FOR RESIDUE EDO A1821
3
AC3
SOFTWARE
ILE A:758 , LEU A:780 , GLN A:789 , HOH A:2055 , HOH A:2094
BINDING SITE FOR RESIDUE EDO A1822
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:728-815|-|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
SCRIB_HUMAN
728-815
862-950
1004-1093
1100-1188
1
A:728-815
-
-
-
[
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Exons
(4, 4)
Info
All Exons
Exon 1.17 (A:725-726)
Exon 1.18 (A:727-756)
Exon 1.19 (A:757-782)
Exon 1.20b (A:783-819 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.16a/1.17
2: Boundary 1.17/1.18
3: Boundary 1.18/1.19
4: Boundary 1.19/1.20b
5: Boundary 1.20b/1.21
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000320476
1
ENSE00001421242
chr8:
144897549-144897384
166
SCRIB_HUMAN
1-53
53
0
-
-
1.3
ENST00000320476
3
ENSE00001710051
chr8:
144896288-144896171
118
SCRIB_HUMAN
54-93
40
0
-
-
1.4
ENST00000320476
4
ENSE00001280634
chr8:
144896066-144895988
79
SCRIB_HUMAN
93-119
27
0
-
-
1.5
ENST00000320476
5
ENSE00001280624
chr8:
144895896-144895807
90
SCRIB_HUMAN
119-149
31
0
-
-
1.6
ENST00000320476
6
ENSE00001280614
chr8:
144895696-144895640
57
SCRIB_HUMAN
149-168
20
0
-
-
1.7
ENST00000320476
7
ENSE00001280605
chr8:
144895544-144895481
64
SCRIB_HUMAN
168-189
22
0
-
-
1.8
ENST00000320476
8
ENSE00001280596
chr8:
144895274-144895200
75
SCRIB_HUMAN
190-214
25
0
-
-
1.9
ENST00000320476
9
ENSE00001280589
chr8:
144895131-144894987
145
SCRIB_HUMAN
215-263
49
0
-
-
1.10
ENST00000320476
10
ENSE00001280580
chr8:
144894554-144894436
119
SCRIB_HUMAN
263-302
40
0
-
-
1.11
ENST00000320476
11
ENSE00001280573
chr8:
144893515-144893316
200
SCRIB_HUMAN
303-369
67
0
-
-
1.12
ENST00000320476
12
ENSE00001280566
chr8:
144893242-144893076
167
SCRIB_HUMAN
369-425
57
0
-
-
1.13
ENST00000320476
13
ENSE00001280559
chr8:
144892986-144892856
131
SCRIB_HUMAN
425-468
44
0
-
-
1.14
ENST00000320476
14
ENSE00001280549
chr8:
144892774-144892649
126
SCRIB_HUMAN
469-510
42
0
-
-
1.15
ENST00000320476
15
ENSE00001280543
chr8:
144891888-144891721
168
SCRIB_HUMAN
511-566
56
0
-
-
1.16a
ENST00000320476
16a
ENSE00001280537
chr8:
144891195-144890779
417
SCRIB_HUMAN
567-705
139
0
-
-
1.17
ENST00000320476
17
ENSE00001280531
chr8:
144889784-144889722
63
SCRIB_HUMAN
706-726
21
1
A:725-726
2
1.18
ENST00000320476
18
ENSE00001280522
chr8:
144889183-144889094
90
SCRIB_HUMAN
727-756
30
1
A:727-756
30
1.19
ENST00000320476
19
ENSE00001280512
chr8:
144888654-144888577
78
SCRIB_HUMAN
757-782
26
1
A:757-782
26
1.20b
ENST00000320476
20b
ENSE00001280505
chr8:
144887605-144887282
324
SCRIB_HUMAN
783-890
108
1
A:783-819 (gaps)
41
1.21
ENST00000320476
21
ENSE00001280498
chr8:
144887184-144887104
81
SCRIB_HUMAN
891-917
27
0
-
-
1.22
ENST00000320476
22
ENSE00001280489
chr8:
144886995-144886738
258
SCRIB_HUMAN
918-1003
86
0
-
-
1.23a
ENST00000320476
23a
ENSE00001280482
chr8:
144886326-144886216
111
SCRIB_HUMAN
1004-1040
37
0
-
-
1.24
ENST00000320476
24
ENSE00001280475
chr8:
144886110-144885817
294
SCRIB_HUMAN
1041-1138
98
0
-
-
1.25
ENST00000320476
25
ENSE00001280467
chr8:
144885741-144885553
189
SCRIB_HUMAN
1139-1201
63
0
-
-
1.26
ENST00000320476
26
ENSE00001280460
chr8:
144877700-144877590
111
SCRIB_HUMAN
1202-1238
37
0
-
-
1.27
ENST00000320476
27
ENSE00001280713
chr8:
144877503-144877447
57
SCRIB_HUMAN
1239-1257
19
0
-
-
1.28
ENST00000320476
28
ENSE00001280704
chr8:
144877282-144877208
75
SCRIB_HUMAN
1258-1282
25
0
-
-
1.29
ENST00000320476
29
ENSE00001280697
chr8:
144876132-144876070
63
SCRIB_HUMAN
1283-1303
21
0
-
-
1.30b
ENST00000320476
30b
ENSE00001280801
chr8:
144875253-144875146
108
SCRIB_HUMAN
1304-1339
36
0
-
-
1.31a
ENST00000320476
31a
ENSE00001280748
chr8:
144875037-144874878
160
SCRIB_HUMAN
1340-1393
54
0
-
-
1.31c
ENST00000320476
31c
ENSE00001280742
chr8:
144874805-144874655
151
SCRIB_HUMAN
1393-1443
51
0
-
-
1.32a
ENST00000320476
32a
ENSE00001280685
chr8:
144874575-144874390
186
SCRIB_HUMAN
1443-1505
63
0
-
-
1.33
ENST00000320476
33
ENSE00001280794
chr8:
144874303-144874161
143
SCRIB_HUMAN
1505-1553
49
0
-
-
1.34
ENST00000320476
34
ENSE00001280669
chr8:
144874083-144874046
38
SCRIB_HUMAN
1553-1565
13
0
-
-
1.36b
ENST00000320476
36b
ENSE00001346693
chr8:
144873610-144873559
52
SCRIB_HUMAN
1566-1583
18
0
-
-
1.37c
ENST00000320476
37c
ENSE00001280723
chr8:
144873478-144873090
389
SCRIB_HUMAN
1583-1630
48
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2w4fa_ (A:)
View:
Select:
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Classes
(
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Folds
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Superfamilies
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
PDZ domain
(180)
Protein domain
:
automated matches
(53)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d2w4fa_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2w4fA00 (A:725-819)
View:
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Classes
(
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Architectures
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
1a
2w4fA00
A:725-819
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PDZ_2w4fA01 (A:728-812)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PDZ-like
(184)
Family
:
PDZ
(172)
Homo sapiens (Human)
(96)
1a
PDZ-2w4fA01
A:728-812
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Asymmetric Unit 1
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