PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2W2X
Asym. Unit
Info
Asym.Unit (196 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (94 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
COMPLEX OF RAC2 AND PLCG2 SPPH DOMAIN
Authors
:
O. Opaleye, T. D. Bunney, S. M. Roe, L. H. Pearl
Date
:
04 Nov 08 (Deposition) - 05 May 09 (Release) - 05 May 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Hydrolase, Phospholipase C, Phosphoinositides, Rho Gtpases, Rac, Sh2 Domain, Sh3 Domain, Signaling Protein/Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. D. Bunney, O. Opaleye, S. M. Roe, P. Vatter, R. W. Baxendale, C. Walliser, K. L. Everett, M. B. Josephs, C. Christow, F. Rodrigues-Lima, P. Gierschik, L. H. Pearl, M. Katan
Structural Insights Into Formation Of An Active Signaling Complex Between Rac And Phospholipase C Gamma 2.
Mol. Cell V. 34 223 2009
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOP... (GSPa)
1b: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOP... (GSPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GSP
2
Ligand/Ion
5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:11 , ALA A:13 , VAL A:14 , GLY A:15 , LYS A:16 , THR A:17 , CYS A:18 , PHE A:28 , TYR A:32 , PRO A:34 , THR A:35 , GLY A:60 , LYS A:116 , ASP A:118 , LEU A:119 , ALA A:159 , LEU A:160 , MG A:1179
BINDING SITE FOR RESIDUE GSP A1178
2
AC2
SOFTWARE
ASP B:11 , ALA B:13 , VAL B:14 , GLY B:15 , LYS B:16 , THR B:17 , CYS B:18 , PHE B:28 , TYR B:32 , THR B:35 , GLY B:60 , ASP B:118 , LEU B:119 , SER B:158 , ALA B:159 , LEU B:160 , MG B:1179
BINDING SITE FOR RESIDUE GSP B1178
3
AC3
SOFTWARE
THR A:17 , THR A:35 , ASP A:57 , GSP A:1178
BINDING SITE FOR RESIDUE MG A1179
4
AC4
SOFTWARE
THR B:17 , THR B:35 , ASP B:57 , GSP B:1178
BINDING SITE FOR RESIDUE MG B1179
[
close Site info
]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036569 (P29L, chain A/B, )
2: VAR_017452 (D57N, chain A/B, )
3: VAR_047428 (D88Y, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036569
P
29
L
RAC2_HUMAN
Unclassified
---
A/B
P
29
L
2
UniProt
VAR_017452
D
57
N
RAC2_HUMAN
Disease (NEUID)
---
A/B
D
57
N
3
UniProt
VAR_047428
D
883
Y
PLCG2_HUMAN
Polymorphism
17856213
C/D
D
88
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RHO (A:2-176)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RAC2_HUMAN
1-176
1
A:2-176
[
close PROSITE info
]
Exons
(6, 12)
Info
All Exons
Exon 1.1e (A:1-12 | B:2-12)
Exon 1.2 (A:12-36 | B:12-36)
Exon 1.4a (A:36-75 | B:36-75 (gaps))
Exon 1.5 (A:76-96 | B:76-96)
Exon 1.6b (A:97-150 | B:97-150)
Exon 1.7c (A:150-177 | B:150-177)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1e
2: Boundary 1.1e/1.2
3: Boundary 1.2/1.4a
4: Boundary 1.4a/1.5
5: Boundary 1.5/1.6b
6: Boundary 1.6b/1.7c
7: Boundary 1.7c/1.8d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1e
ENST00000249071
1e
ENSE00001045309
chr22:
37640310-37640154
157
RAC2_HUMAN
1-12
12
2
A:1-12
B:2-12
12
11
1.2
ENST00000249071
2
ENSE00001751320
chr22:
37637698-37637627
72
RAC2_HUMAN
12-36
25
2
A:12-36
B:12-36
25
25
1.4a
ENST00000249071
4a
ENSE00001771444
chr22:
37628958-37628841
118
RAC2_HUMAN
36-75
40
2
A:36-75
B:36-75 (gaps)
40
40
1.5
ENST00000249071
5
ENSE00000653854
chr22:
37628034-37627972
63
RAC2_HUMAN
76-96
21
2
A:76-96
B:76-96
21
21
1.6b
ENST00000249071
6b
ENSE00001668004
chr22:
37627430-37627271
160
RAC2_HUMAN
97-150
54
2
A:97-150
B:97-150
54
54
1.7c
ENST00000249071
7c
ENSE00000880141
chr22:
37622843-37622711
133
RAC2_HUMAN
150-192
43
2
A:150-177
B:150-177
28
28
1.8d
ENST00000249071
8d
ENSE00001875917
chr22:
37622079-37621301
779
RAC2_HUMAN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2w2xa_ (A:)
1b: SCOP_d2w2xb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Human (Homo sapiens) [TaxId: 9606]
(112)
1a
d2w2xa_
A:
1b
d2w2xb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2w2xA00 (A:1-177)
1b: CATH_2w2xB00 (B:2-177)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2w2xA00
A:1-177
1b
2w2xB00
B:2-177
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ras_2w2xB01 (B:5-177)
1b: PFAM_Ras_2w2xB02 (B:5-177)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-2w2xB01
B:5-177
1b
Ras-2w2xB02
B:5-177
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (196 KB)
Header - Asym.Unit
Biol.Unit 1 (95 KB)
Header - Biol.Unit 1
Biol.Unit 2 (94 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2W2X
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help