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Getting 'Exon' information from database.
2W2C
Asym. Unit
Info
Asym.Unit (294 KB)
Biol.Unit 1 (281 KB)
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(1)
Title
:
STRUCTURE OF THE TETRADECAMERIC OLIGOMERISATION DOMAIN OF CALCIUM-CALMODULIN DEPENDENT PROTEIN KINASE II DELTA
Authors
:
A. C. W. Pike, P. Rellos, R. Sethi, E. Salah, N. Burgess-Brown, L. Shrest A. Roos, J. W. Murray, F. Von Delft, A. Edwards, C. H. Arrowsmith, J. We C. Bountra, S. Knapp
Date
:
28 Oct 08 (Deposition) - 23 Dec 08 (Release) - 10 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N (1x)
Keywords
:
Serine/Threonine-Protein Kinase, Kinase, Transferase, Atp-Binding, Phosphoprotein, Calmodulin-Binding, Nucleotide-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Rellos, A. C. W. Pike, F. H. Niesen, E. Salah, W. H. Lee, F. Von Delft, S. Knapp
Structure Of The Camkiidelta/Calmodulin Complex Reveals The Molecular Mechanism Of Camkii Kinase Activation.
Plos Biol. V. 8 426 2010
[
close entry info
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
1m: ACETATE ION (ACTm)
1n: ACETATE ION (ACTn)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
14
Ligand/Ion
ACETATE ION
2
CD
6
Ligand/Ion
CADMIUM ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:361 , TYR A:369 , ARG A:433 , ARG A:453 , PHE A:467 , ARG A:469
BINDING SITE FOR RESIDUE ACT A 632
02
AC2
SOFTWARE
ILE B:361 , TYR B:369 , ARG B:433 , ARG B:453 , PHE B:467 , ARG B:469
BINDING SITE FOR RESIDUE ACT B 632
03
AC3
SOFTWARE
ILE C:361 , TYR C:369 , ARG C:433 , ARG C:453 , PHE C:467 , ARG C:469
BINDING SITE FOR RESIDUE ACT C 632
04
AC4
SOFTWARE
ILE D:361 , TYR D:369 , ARG D:433 , ARG D:453 , PHE D:467 , ARG D:469
BINDING SITE FOR RESIDUE ACT D 632
05
AC5
SOFTWARE
ILE E:361 , TYR E:369 , ARG E:453 , PHE E:467 , ARG E:469
BINDING SITE FOR RESIDUE ACT E 632
06
AC6
SOFTWARE
ILE F:361 , TYR F:369 , ARG F:453 , PHE F:467 , ARG F:469
BINDING SITE FOR RESIDUE ACT F 632
07
AC7
SOFTWARE
ILE G:361 , TYR G:369 , ARG G:433 , ARG G:453 , PHE G:467 , ARG G:469
BINDING SITE FOR RESIDUE ACT G 632
08
AC8
SOFTWARE
ILE H:361 , TYR H:369 , ARG H:453 , PHE H:467 , ARG H:469
BINDING SITE FOR RESIDUE ACT H 632
09
AC9
SOFTWARE
ILE I:361 , TYR I:369 , ARG I:433 , ARG I:453 , PHE I:467 , ARG I:469
BINDING SITE FOR RESIDUE ACT I 632
10
BC1
SOFTWARE
ILE J:361 , TYR J:369 , ARG J:433 , ARG J:453 , PHE J:467 , ARG J:469
BINDING SITE FOR RESIDUE ACT J 632
11
BC2
SOFTWARE
ILE K:361 , TYR K:369 , ARG K:453 , PHE K:467 , ARG K:469 , HOH K:2001
BINDING SITE FOR RESIDUE ACT K 632
12
BC3
SOFTWARE
ILE L:361 , TYR L:369 , ARG L:433 , ARG L:453 , PHE L:467 , ARG L:469
BINDING SITE FOR RESIDUE ACT L 632
13
BC4
SOFTWARE
ILE M:361 , TYR M:369 , ARG M:433 , ARG M:453 , PHE M:467 , ARG M:469
BINDING SITE FOR RESIDUE ACT M 632
14
BC5
SOFTWARE
ILE N:361 , TYR N:369 , ARG N:433 , ARG N:453 , PHE N:467 , ARG N:469
BINDING SITE FOR RESIDUE ACT N 632
15
BC6
SOFTWARE
ASP B:425 , HOH B:2006 , HOH B:2009 , ASP L:425
BINDING SITE FOR RESIDUE CD B1472
16
BC7
SOFTWARE
ASP H:424 , ASP N:425 , ARG N:457
BINDING SITE FOR RESIDUE CD H1472
17
BC8
SOFTWARE
ASP F:425 , ASP G:425 , HOH G:2005
BINDING SITE FOR RESIDUE CD F1472
18
BC9
SOFTWARE
ASP J:425 , CD J:1474 , ASP M:425
BINDING SITE FOR RESIDUE CD J1472
19
CC1
SOFTWARE
ASP G:424 , ASP J:424
BINDING SITE FOR RESIDUE CD J1473
20
CC2
SOFTWARE
ASP J:424 , ASP J:425 , CD J:1472 , ASP M:425
BINDING SITE FOR RESIDUE CD J1474
[
close Site info
]
SAPs(SNPs)/Variants
(1, 14)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_028196 (Q463E, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_028196
Q
463
E
KCC2D_HUMAN
Polymorphism
1053668
A/B/C/D/E/F/G/H/I/J/K/L/M/N
Q
463
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(4, 56)
Info
All Exons
Exon 1.19a (A:339-345 | B:340-345 | C:341-345 ...)
Exon 1.20 (A:345-370 | B:345-370 | C:345-370 ...)
Exon 1.21 (A:370-402 | B:370-402 | C:370-402 ...)
Exon 1.22a (A:402-471 (gaps) | B:402-471 (gaps...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.15a/1.19a
2: Boundary 1.19a/1.20
3: Boundary 1.20/1.21
4: Boundary 1.21/1.22a
5: Boundary 1.22a/1.23b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1i
ENST00000342666
1i
ENSE00001872886
chr4:
114682224-114682160
65
KCC2D_HUMAN
1-22
22
0
-
-
1.2a
ENST00000342666
2a
ENSE00001679875
chr4:
114680570-114680476
95
KCC2D_HUMAN
22-54
33
0
-
-
1.4
ENST00000342666
4
ENSE00001795805
chr4:
114582928-114582869
60
KCC2D_HUMAN
54-74
21
0
-
-
1.5
ENST00000342666
5
ENSE00001276352
chr4:
114530362-114530308
55
KCC2D_HUMAN
74-92
19
0
-
-
1.6
ENST00000342666
6
ENSE00001003913
chr4:
114473252-114473187
66
KCC2D_HUMAN
92-114
23
0
-
-
1.7
ENST00000342666
7
ENSE00001276336
chr4:
114469885-114469813
73
KCC2D_HUMAN
114-138
25
0
-
-
1.9
ENST00000342666
9
ENSE00001617342
chr4:
114458599-114458497
103
KCC2D_HUMAN
139-173
35
0
-
-
1.10
ENST00000342666
10
ENSE00001672540
chr4:
114452455-114452372
84
KCC2D_HUMAN
173-201
29
0
-
-
1.11a
ENST00000342666
11a
ENSE00001699970
chr4:
114438813-114438719
95
KCC2D_HUMAN
201-232
32
0
-
-
1.12
ENST00000342666
12
ENSE00001003911
chr4:
114436347-114436225
123
KCC2D_HUMAN
233-273
41
0
-
-
1.13a
ENST00000342666
13a
ENSE00001791998
chr4:
114435069-114434986
84
KCC2D_HUMAN
274-301
28
0
-
-
1.14
ENST00000342666
14
ENSE00001752494
chr4:
114434526-114434484
43
KCC2D_HUMAN
302-316
15
0
-
-
1.15a
ENST00000342666
15a
ENSE00001121166
chr4:
114430831-114430794
38
KCC2D_HUMAN
316-328
13
0
-
-
1.19a
ENST00000342666
19a
ENSE00001003903
chr4:
114421667-114421619
49
KCC2D_HUMAN
329-345
17
14
A:339-345
B:340-345
C:341-345
D:342-345
E:338-345
F:341-345
G:341-345
H:339-345
I:338-345
J:342-345
K:342-345
L:340-345
M:343-345
N:336-345
7
6
5
4
8
5
5
7
8
4
4
6
3
10
1.20
ENST00000342666
20
ENSE00001121155
chr4:
114386760-114386685
76
KCC2D_HUMAN
345-370
26
14
A:345-370
B:345-370
C:345-370
D:345-370
E:345-370
F:345-370
G:345-370
H:345-370
I:345-370
J:345-370
K:345-370
L:345-370
M:345-370
N:345-370
26
26
26
26
26
26
26
26
26
26
26
26
26
26
1.21
ENST00000342666
21
ENSE00002169632
chr4:
114381397-114381303
95
KCC2D_HUMAN
370-402
33
14
A:370-402
B:370-402
C:370-402
D:370-402
E:370-402
F:370-402
G:370-402
H:370-402
I:370-402
J:370-402
K:370-402
L:370-402
M:370-402
N:370-402
33
33
33
33
33
33
33
33
33
33
33
33
33
33
1.22a
ENST00000342666
22a
ENSE00001276264
chr4:
114378719-114378491
229
KCC2D_HUMAN
402-478
77
14
A:402-471 (gaps)
B:402-471 (gaps)
C:402-471 (gaps)
D:402-471 (gaps)
E:402-471 (gaps)
F:402-471 (gaps)
G:402-471 (gaps)
H:402-471 (gaps)
I:402-471 (gaps)
J:402-471 (gaps)
K:402-471 (gaps)
L:402-471 (gaps)
M:402-471 (gaps)
N:402-471 (gaps)
70
70
70
70
70
70
70
70
70
70
70
70
70
70
1.23b
ENST00000342666
23b
ENSE00001276388
chr4:
114376977-114376882
96
KCC2D_HUMAN
478-499
22
0
-
-
1.24a
ENST00000342666
24a
ENSE00002033536
chr4:
114375671-114375261
411
KCC2D_HUMAN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(1, 14)
Info
All SCOP Domains
1a: SCOP_d2w2ca_ (A:)
1b: SCOP_d2w2cf_ (F:)
1c: SCOP_d2w2cg_ (G:)
1d: SCOP_d2w2ch_ (H:)
1e: SCOP_d2w2ci_ (I:)
1f: SCOP_d2w2cj_ (J:)
1g: SCOP_d2w2ck_ (K:)
1h: SCOP_d2w2cl_ (L:)
1i: SCOP_d2w2cm_ (M:)
1j: SCOP_d2w2cn_ (N:)
1k: SCOP_d2w2cb_ (B:)
1l: SCOP_d2w2cc_ (C:)
1m: SCOP_d2w2cd_ (D:)
1n: SCOP_d2w2ce_ (E:)
View:
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)
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)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
NTF2-like
(231)
Family
:
Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
(5)
Protein domain
:
automated matches
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2w2ca_
A:
1b
d2w2cf_
F:
1c
d2w2cg_
G:
1d
d2w2ch_
H:
1e
d2w2ci_
I:
1f
d2w2cj_
J:
1g
d2w2ck_
K:
1h
d2w2cl_
L:
1i
d2w2cm_
M:
1j
d2w2cn_
N:
1k
d2w2cb_
B:
1l
d2w2cc_
C:
1m
d2w2cd_
D:
1n
d2w2ce_
E:
[
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]
CATH Domains
(1, 14)
Info
all CATH domains
1a: CATH_2w2cH00 (H:339-471)
1b: CATH_2w2cN00 (N:336-471)
1c: CATH_2w2cL00 (L:340-471)
1d: CATH_2w2cE00 (E:338-471)
1e: CATH_2w2cA00 (A:339-471)
1f: CATH_2w2cB00 (B:340-471)
1g: CATH_2w2cI00 (I:338-471)
1h: CATH_2w2cC00 (C:341-471)
1i: CATH_2w2cG00 (G:341-471)
1j: CATH_2w2cK00 (K:342-471)
1k: CATH_2w2cF00 (F:341-471)
1l: CATH_2w2cD00 (D:342-471)
1m: CATH_2w2cJ00 (J:342-471)
1n: CATH_2w2cM00 (M:343-471)
View:
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)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.50, no name defined]
(113)
Human (Homo sapiens)
(5)
1a
2w2cH00
H:339-471
1b
2w2cN00
N:336-471
1c
2w2cL00
L:340-471
1d
2w2cE00
E:338-471
1e
2w2cA00
A:339-471
1f
2w2cB00
B:340-471
1g
2w2cI00
I:338-471
1h
2w2cC00
C:341-471
1i
2w2cG00
G:341-471
1j
2w2cK00
K:342-471
1k
2w2cF00
F:341-471
1l
2w2cD00
D:342-471
1m
2w2cJ00
J:342-471
1n
2w2cM00
M:343-471
[
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]
Pfam Domains
(1, 14)
Info
all PFAM domains
1a: PFAM_CaMKII_AD_2w2cN01 (N:346-471)
1b: PFAM_CaMKII_AD_2w2cN02 (N:346-471)
1c: PFAM_CaMKII_AD_2w2cN03 (N:346-471)
1d: PFAM_CaMKII_AD_2w2cN04 (N:346-471)
1e: PFAM_CaMKII_AD_2w2cN05 (N:346-471)
1f: PFAM_CaMKII_AD_2w2cN06 (N:346-471)
1g: PFAM_CaMKII_AD_2w2cN07 (N:346-471)
1h: PFAM_CaMKII_AD_2w2cN08 (N:346-471)
1i: PFAM_CaMKII_AD_2w2cN09 (N:346-471)
1j: PFAM_CaMKII_AD_2w2cN10 (N:346-471)
1k: PFAM_CaMKII_AD_2w2cN11 (N:346-471)
1l: PFAM_CaMKII_AD_2w2cN12 (N:346-471)
1m: PFAM_CaMKII_AD_2w2cN13 (N:346-471)
1n: PFAM_CaMKII_AD_2w2cN14 (N:346-471)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NTF2
(66)
Family
:
CaMKII_AD
(2)
Homo sapiens (Human)
(2)
1a
CaMKII_AD-2w2cN01
N:346-471
1b
CaMKII_AD-2w2cN02
N:346-471
1c
CaMKII_AD-2w2cN03
N:346-471
1d
CaMKII_AD-2w2cN04
N:346-471
1e
CaMKII_AD-2w2cN05
N:346-471
1f
CaMKII_AD-2w2cN06
N:346-471
1g
CaMKII_AD-2w2cN07
N:346-471
1h
CaMKII_AD-2w2cN08
N:346-471
1i
CaMKII_AD-2w2cN09
N:346-471
1j
CaMKII_AD-2w2cN10
N:346-471
1k
CaMKII_AD-2w2cN11
N:346-471
1l
CaMKII_AD-2w2cN12
N:346-471
1m
CaMKII_AD-2w2cN13
N:346-471
1n
CaMKII_AD-2w2cN14
N:346-471
[
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(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
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