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2W1S
Biol. Unit 1
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Asym.Unit (116 KB)
Biol.Unit 1 (57 KB)
Biol.Unit 2 (55 KB)
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Title
:
UNIQUE LIGAND BINDING SPECIFICITY OF A FAMILY 32 CARBOHYDRATE-BINDING MODULE FROM THE MU TOXIN PRODUCED BY CLOSTRIDIUM PERFRINGENS
Authors
:
E. Ficko-Blean, A. B. Boraston
Date
:
20 Oct 08 (Deposition) - 05 May 09 (Release) - 23 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hexosaminidase, Clostridium Perfringens, Family 32 Carbohydrate Binding Module, Toxin, Secreted, Virulence, Hydrolase, Glycosidase, Family 84 Glycoside Hydrolase
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Reference
:
E. Ficko-Blean, A. B. Boraston
N-Acetylglucosamine Recognition By A Family 32 Carbohydrate-Binding Module From Clostridium Perfringens Nagh.
J. Mol. Biol. V. 390 208 2009
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
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No.
Name
Count
Type
Full Name
1
BTB
1
Ligand/Ion
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2
CA
-1
Ligand/Ion
CALCIUM ION
3
MSE
1
Mod. Amino Acid
SELENOMETHIONINE
4
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(4, 4)
Info
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1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:825 , ASP A:828 , ASP A:830 , THR A:833 , SER A:939 , GLU A:940
BINDING SITE FOR RESIDUE CA A1946
2
AC3
SOFTWARE
ASN A:871 , LYS A:908 , HOH A:2041
BINDING SITE FOR RESIDUE NA A1947
3
AC4
SOFTWARE
TYR A:886 , HOH A:2182 , GLU B:814 , HOH B:2053
BINDING SITE FOR RESIDUE NA B1947
4
AC5
SOFTWARE
TRP A:836 , ASP A:877 , TRP A:935 , HOH A:2121 , HOH A:2262 , HOH A:2263 , HOH A:2264 , HOH A:2265 , TRP B:836 , ASP B:877 , ASN B:933 , LYS B:934 , TRP B:935
BINDING SITE FOR RESIDUE BTB A1948
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SAPs(SNPs)/Variants
(1, 1)
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(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_NAGH_CLOPE_006 (V944V, chain A, )
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No.
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Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_NAGH_CLOPE_006
*
I
944
V
NAGH_CLOPE
---
---
A
V
944
V
* ID not provided by source
SNP/SAP Summary Statistics
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Exons
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_F5_F8_type_C_2w1sB01 (B:809-941)
1b: PFAM_F5_F8_type_C_2w1sB02 (B:809-941)
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Clan
:
GBD
(153)
Family
:
F5_F8_type_C
(45)
Clostridium perfringens
(5)
1a
F5_F8_type_C-2w1sB01
B:809-941
1b
F5_F8_type_C-2w1sB02
B:809-941
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Asymmetric Unit 1
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Asym.Unit (116 KB)
Header - Asym.Unit
Biol.Unit 1 (57 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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