PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2W1G
Asym. Unit
Info
Asym.Unit (51 KB)
Biol.Unit 1 (46 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE DETERMINATION OF AURORA KINASE IN COMPLEX WITH INHIBITOR
Authors
:
S. Howard, V. Berdini, J. A. Boulstridge, M. G. Carr, D. M. Cross, J. Curry, L. A. Devine, T. R. Early, L. Fazal, A. L. Gill, M. Heathcote, S. Maman, J. E. Matthews, R. L. Mcmenamin, E. F. Navarro, M. A. O'Brien, M. O'Reilly, D. C. Rees, M. Reule, D. Tisi, G. Williams, M. Vinkovic, P. G. Wyatt
Date
:
17 Oct 08 (Deposition) - 27 Jan 09 (Release) - 10 Nov 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.71
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cancer, Aurora, Kinase, Inhibitor, Nucleotide-Binding, Serine/Threonine-Protein Kinase, Transferase, Atp-Binding, Polymorphism, Phosphoprotein, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Howard, V. Berdini, J. A. Boulstridge, M. G. Carr, D. M. Cross, J. Curry, L. A. Devine, T. R. Early, L. Fazal, A. L. Gill, M. Heathcote, S. Maman, J. E. Matthews, R. L. Mcmenamin, E. F. Navarro, M. A. O'Brien, M. O'Reilly, D. C. Rees, M. Reule, D. Tisi, G. Williams, M. Vinkovic, P. G. Wyatt
Fragment-Based Discovery Of The Pyrazol-4-Yl Urea (At9283), A Multitargeted Kinase Inhibitor With Potent Aurora Kinase Activity.
J. Med. Chem. V. 52 379 2009
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: 2-{4-[(CYCLOPROPYLCARBAMOYL)AMINO]... (L0Ga)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
L0G
1
Ligand/Ion
2-{4-[(CYCLOPROPYLCARBAMOYL)AMINO]-1H-PYRAZOL-3-YL}-6-(MORPHOLIN-4-IUM-4-YLMETHYL)-1H-3,1-BENZIMIDAZOL-3-IUM
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:137 , LEU A:139 , VAL A:147 , ALA A:160 , LYS A:162 , LEU A:194 , GLU A:211 , ALA A:213 , PRO A:214 , GLY A:216 , LEU A:263 , HIS A:366
BINDING SITE FOR RESIDUE L0G A1390
[
close Site info
]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041128 (S155R, chain A, )
2: VAR_041129 (V174M, chain A, )
3: VAR_041130 (M373V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041128
S
155
R
AURKA_HUMAN
Unclassified
---
A
S
155
R
2
UniProt
VAR_041129
V
174
M
AURKA_HUMAN
Unclassified
---
A
V
174
M
3
UniProt
VAR_041130
M
373
V
AURKA_HUMAN
Polymorphism
33923703
A
M
373
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:139-162)
2: PROTEIN_KINASE_ST (A:252-264)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
AURKA_HUMAN
139-162
1
A:139-162
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
AURKA_HUMAN
252-264
1
A:252-264
[
close PROSITE info
]
Exons
(5, 5)
Info
All Exons
Exon 1.8b (A:127-189)
Exon 1.9 (A:189-235)
Exon 1.10b (A:236-281)
Exon 1.11a (A:291-343)
Exon 1.11c (A:344-390)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.7/1.8b
2: Boundary 1.8b/1.9
3: Boundary 1.9/1.10b
4: Boundary 1.10b/1.11a
5: Boundary 1.11a/1.11c
6: Boundary 1.11c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1k
ENST00000371356
1k
ENSE00001455019
chr20:
54967252-54967224
29
AURKA_HUMAN
-
0
0
-
-
1.3
ENST00000371356
3
ENSE00001684250
chr20:
54963840-54963743
98
AURKA_HUMAN
-
0
0
-
-
1.5b
ENST00000371356
5b
ENSE00000845695
chr20:
54963258-54963212
47
AURKA_HUMAN
1-14
14
0
-
-
1.6b
ENST00000371356
6b
ENSE00002179826
chr20:
54961589-54961313
277
AURKA_HUMAN
15-107
93
0
-
-
1.7
ENST00000371356
7
ENSE00000991660
chr20:
54959380-54959326
55
AURKA_HUMAN
107-125
19
0
-
-
1.8b
ENST00000371356
8b
ENSE00002188846
chr20:
54958232-54958041
192
AURKA_HUMAN
125-189
65
1
A:127-189
63
1.9
ENST00000371356
9
ENSE00000512389
chr20:
54956627-54956489
139
AURKA_HUMAN
189-235
47
1
A:189-235
47
1.10b
ENST00000371356
10b
ENSE00000662874
chr20:
54948612-54948464
149
AURKA_HUMAN
236-285
50
1
A:236-281
46
1.11a
ENST00000371356
11a
ENSE00000512391
chr20:
54945715-54945541
175
AURKA_HUMAN
285-343
59
1
A:291-343
53
1.11c
ENST00000371356
11c
ENSE00001257584
chr20:
54945396-54944446
951
AURKA_HUMAN
344-403
60
1
A:344-390
47
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2w1ga_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d2w1ga_
A:
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2w1gA01 (A:128-216)
2a: CATH_2w1gA02 (A:217-387)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2w1gA01
A:128-216
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2w1gA02
A:217-387
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (51 KB)
Header - Asym.Unit
Biol.Unit 1 (46 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2W1G
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help