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2W0V
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (227 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLMU FROM HAEMOPHILUS INFLUENZAE IN COMPLEX WITH QUINAZOLINE INHIBITOR 1
Authors
:
I. Mochalkin, M. Melnick
Date
:
10 Oct 08 (Deposition) - 17 Nov 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.99
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Peptidoglycan Synthesis, Glmu, Bacterial, Inhibitor, Magnesium, Cell Shape, Transferase, Active Site, Metal-Binding, Cell Wall Biogenesis/Degradation, Multifunctional Enzyme, Nucleotidyltransferase, Acyltransferase, Uridyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Melnick, I. Mochalkin, S. Lightle, L. Narasimhan, L. Mcdowell, R. Sarver
Discovery And Initial Sar Of Quinazoline Inhibitors Of Glmu From Haemophilus Influenzae
To Be Published
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: 6-(CYCLOPROP-2-EN-1-YLMETHOXY)-2-[... (LZRa)
2a: TETRAETHYLENE GLYCOL (PG4a)
3a: TRIETHYLENE GLYCOL (PGEa)
3b: TRIETHYLENE GLYCOL (PGEb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
LZR
1
Ligand/Ion
6-(CYCLOPROP-2-EN-1-YLMETHOXY)-2-[6-(CYCLOPROPYLMETHYL)-5-OXO-3,4,5,6-TETRAHYDRO-2,6-NAPHTHYRIDIN-2(1H)-YL]-7-METHOXYQUINAZOLIN-4(3H)-ONE
2
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
3
PGE
2
Ligand/Ion
TRIETHYLENE GLYCOL
4
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:11 , GLY A:14 , VAL A:26 , GLN A:76 , GLN A:79 , THR A:82 , TYR A:103 , ASP A:105 , TYR A:139 , THR A:170 , VAL A:223 , GLU A:224 , GLY A:225
BINDING SITE FOR RESIDUE LZR A1454
02
AC2
SOFTWARE
ASN A:72 , PHE A:92 , ASN A:386 , ASP A:388 , PHE A:402 , THR A:420 , ALA A:423 , ILE A:438 , HOH A:2243 , HOH A:2272 , HOH A:2273
BINDING SITE FOR RESIDUE PG4 A1455
03
AC3
SOFTWARE
VAL A:153 , ASP A:157 , ASN A:159 , GLN A:162 , ASN A:189 , ASN A:191 , ALA A:192 , GLY A:194
BINDING SITE FOR RESIDUE PGE A1456
04
AC4
SOFTWARE
GLU A:49 , ASN A:50 , GLN A:70 , TYR A:387 , HOH A:2274 , HOH A:2275
BINDING SITE FOR RESIDUE PGE A1457
05
AC5
SOFTWARE
LYS A:360 , ASN A:362 , HIS A:363 , LYS A:392 , HOH A:2216 , HOH A:2276 , HOH A:2277
BINDING SITE FOR RESIDUE SO4 A1458
06
AC6
SOFTWARE
ASN A:377 , HOH A:2278 , HOH A:2279
BINDING SITE FOR RESIDUE SO4 A1459
07
AC7
SOFTWARE
ARG A:331 , ARG A:333 , PRO A:334 , HOH A:2178
BINDING SITE FOR RESIDUE SO4 A1460
08
AC8
SOFTWARE
ASN A:227 , GLN A:231
BINDING SITE FOR RESIDUE SO4 A1461
09
AC9
SOFTWARE
LYS A:357 , ASN A:375
BINDING SITE FOR RESIDUE SO4 A1462
10
BC1
SOFTWARE
GLY A:14 , LYS A:15 , GLY A:16 , THR A:17 , HOH A:2282 , HOH A:2283
BINDING SITE FOR RESIDUE SO4 A1463
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HEXAPEP_TRANSFERASES (A:403-431)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEXAPEP_TRANSFERASES
PS00101
Hexapeptide-repeat containing-transferases signature.
GLMU_HAEIN
403-431
1
A:403-431
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2w0va2 (A:252-454)
2a: SCOP_d2w0va1 (A:4-251)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded left-handed beta-helix
(154)
Superfamily
:
Trimeric LpxA-like enzymes
(147)
Family
:
automated matches
(55)
Protein domain
:
automated matches
(55)
Haemophilus influenzae [TaxId: 727]
(9)
1a
d2w0va2
A:252-454
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
automated matches
(48)
Protein domain
:
automated matches
(48)
Haemophilus influenzae [TaxId: 727]
(9)
2a
d2w0va1
A:4-251
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 5)
Info
all PFAM domains
1a: PFAM_NTP_transf_3_2w0vA01 (A:8-258)
2a: PFAM_Hexapep_2w0vA02 (A:394-429)
2b: PFAM_Hexapep_2w0vA03 (A:394-429)
2c: PFAM_Hexapep_2w0vA04 (A:394-429)
2d: PFAM_Hexapep_2w0vA05 (A:394-429)
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Organisms
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)
(
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Clan
:
GT-A
(172)
Family
:
NTP_transf_3
(13)
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
(7)
1a
NTP_transf_3-2w0vA01
A:8-258
Clan
:
no clan defined [family: Hexapep]
(52)
Family
:
Hexapep
(52)
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
(10)
2a
Hexapep-2w0vA02
A:394-429
2b
Hexapep-2w0vA03
A:394-429
2c
Hexapep-2w0vA04
A:394-429
2d
Hexapep-2w0vA05
A:394-429
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Chain A
Asymmetric Unit 1
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Asym.Unit (84 KB)
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