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2VZU
Asym. Unit
Info
Asym.Unit (289 KB)
Biol.Unit 1 (143 KB)
Biol.Unit 2 (143 KB)
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(1)
Title
:
COMPLEX OF AMYCOLATOPSIS ORIENTALIS EXO-CHITOSANASE CSXA D469A WITH PNP-BETA-D-GLUCOSAMINE
Authors
:
A. Lammerts Van Bueren, M. G. Ghinet, K. Gregg, A. Fleury, R. Brzezinski, A. B. Boraston
Date
:
05 Aug 08 (Deposition) - 14 Oct 08 (Release) - 29 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gh2, Csxa, Pnp-Glucosamine, Glycoside Hydrolase, Exo-Beta-D-Glucosaminidase, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Lammerts Van Bueren, M. G. Ghinet, K. Gregg, A. Fleury, R. Brzezinski, A. B. Boraston
The Structural Basis Of Substrate Recognition In An Exo-Beta-D-Glucosaminidase Involved In Chitosan Hydrolysis.
J. Mol. Biol. V. 385 131 2009
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
3a: PNP-BETA-D-GLUCOSAMINE (PNJa)
3b: PNP-BETA-D-GLUCOSAMINE (PNJb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CD
6
Ligand/Ion
CADMIUM ION
3
PNJ
2
Ligand/Ion
PNP-BETA-D-GLUCOSAMINE
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS B:244 , ASP B:246
BINDING SITE FOR RESIDUE CD B1899
2
AC2
SOFTWARE
ASP B:296
BINDING SITE FOR RESIDUE CD B1900
3
AC3
SOFTWARE
ASN A:299 , HIS A:310 , HOH A:2122 , ASP B:68 , LYS B:187
BINDING SITE FOR RESIDUE CD B1901
4
AC4
SOFTWARE
HIS B:310
BINDING SITE FOR RESIDUE CD A1899
5
AC5
SOFTWARE
GLY A:425 , ASN A:428 , GLY A:429 , GLU A:431 , GLY A:433
BINDING SITE FOR RESIDUE CD A1900
6
AC6
SOFTWARE
ASN B:428 , GLY B:429 , GLU B:431 , GLY B:433 , HOH B:2197
BINDING SITE FOR RESIDUE CD B1902
7
AC7
SOFTWARE
TYR B:615 , VAL B:764 , ALA B:857 , VAL B:858 , SER B:859
BINDING SITE FOR RESIDUE ACT B1903
8
AC8
SOFTWARE
ILE A:202 , ASP A:203 , TRP A:204 , GLU A:394 , CYS A:419 , MET A:512 , TYR A:516 , GLU A:541 , PHE A:583 , TRP A:642 , TRP A:653 , TRP A:781 , HOH A:2450 , HOH A:2451
BINDING SITE FOR RESIDUE PNJ A1901
9
AC9
SOFTWARE
ILE B:202 , ASP B:203 , TRP B:204 , GLU B:394 , CYS B:419 , MET B:512 , TYR B:516 , GLU B:541 , PHE B:583 , TRP B:642 , TRP B:653 , TRP B:781 , HOH B:2427 , HOH B:2428
BINDING SITE FOR RESIDUE PNJ B1904
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 10)
Info
All SCOP Domains
1a: SCOP_d2vzua1 (A:49-225)
1b: SCOP_d2vzub1 (B:49-225)
2a: SCOP_d2vzua2 (A:226-335)
2b: SCOP_d2vzua4 (A:675-777)
2c: SCOP_d2vzua5 (A:778-899)
2d: SCOP_d2vzub2 (B:226-335)
2e: SCOP_d2vzub4 (B:675-777)
2f: SCOP_d2vzub5 (B:778-899)
3a: SCOP_d2vzua3 (A:336-674)
3b: SCOP_d2vzub3 (B:336-674)
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Classes
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)
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Folds
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Amycolatopsis orientalis [TaxId: 31958]
(4)
1a
d2vzua1
A:49-225
1b
d2vzub1
B:49-225
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
beta-Galactosidase/glucuronidase domain
(79)
Family
:
automated matches
(30)
Protein domain
:
automated matches
(30)
Amycolatopsis orientalis [TaxId: 31958]
(4)
2a
d2vzua2
A:226-335
2b
d2vzua4
A:675-777
2c
d2vzua5
A:778-899
2d
d2vzub2
B:226-335
2e
d2vzub4
B:675-777
2f
d2vzub5
B:778-899
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
automated matches
(180)
Protein domain
:
automated matches
(180)
Amycolatopsis orientalis [TaxId: 31958]
(4)
3a
d2vzua3
A:336-674
3b
d2vzub3
B:336-674
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_2_N_2vzuB01 (B:55-223)
1b: PFAM_Glyco_hydro_2_N_2vzuB02 (B:55-223)
2a: PFAM_Glyco_hydro_2_2vzuB03 (B:227-335)
2b: PFAM_Glyco_hydro_2_2vzuB04 (B:227-335)
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Clans
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Clan
:
GBD
(153)
Family
:
Glyco_hydro_2_N
(32)
Amycolatopsis orientalis (Nocardia orientalis)
(5)
1a
Glyco_hydro_2_N-2vzuB01
B:55-223
1b
Glyco_hydro_2_N-2vzuB02
B:55-223
Clan
:
no clan defined [family: Glyco_hydro_2]
(31)
Family
:
Glyco_hydro_2
(31)
Amycolatopsis orientalis (Nocardia orientalis)
(5)
2a
Glyco_hydro_2-2vzuB03
B:227-335
2b
Glyco_hydro_2-2vzuB04
B:227-335
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (289 KB)
Header - Asym.Unit
Biol.Unit 1 (143 KB)
Header - Biol.Unit 1
Biol.Unit 2 (143 KB)
Header - Biol.Unit 2
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