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2VZI
Asym. Unit
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Asym.Unit (34 KB)
Biol.Unit 1 (29 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C-TERMINAL CALPONIN HOMOLOGY DOMAIN OF ALPHA-PARVIN IN COMPLEX WITH PAXILLIN LD4 MOTIF
Authors
:
S. Lorenz, I. Vakonakis, E. D. Lowe, I. D. Campbell, M. E. M. Noble, M. K. H
Date
:
01 Aug 08 (Deposition) - 28 Oct 08 (Release) - 30 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cell Adhesion, Cell Membrane, Metal-Binding, Calponin Homology Domain, Cytoskeleton, Cell Junction, Actin-Binding, Membrane, Ld2 Motif, Lim Domain, Phosphoprotein
(Keyword Search:
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Reference
:
S. Lorenz, I. Vakonakis, E. D. Lowe, I. D. Campbell, M. E. M. Noble, M. K. Hoellerer
Structural Analysis Of The Interactions Between Paxillin Ld Motifs And Alpha-Parvin
Structure V. 16 1521 2008
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
2a: TETRAETHYLENE GLYCOL (PG4a)
3a: TRIETHYLENE GLYCOL (PGEa)
3b: TRIETHYLENE GLYCOL (PGEb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
3
PGE
2
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:262 , ALA B:291 , ASP B:318 , SER B:319 , PHE B:320 , LYS B:323 , VAL B:350
BINDING SITE FOR RESIDUE PG4 B1373
2
AC2
SOFTWARE
ASP B:336 , TYR B:362 , ASN B:363 , THR B:366
BINDING SITE FOR RESIDUE PGE B1377
3
AC3
SOFTWARE
PHE B:271 , LYS B:274 , HIS B:275 , TYR B:368 , ARG B:369 , VAL B:371 , HOH B:2037
BINDING SITE FOR RESIDUE EDO B1374
4
AC4
SOFTWARE
GLN B:289 , ASP B:292 , VAL B:294 , TYR B:295 , LEU B:315 , THR B:316
BINDING SITE FOR RESIDUE PGE B1375
5
AC5
SOFTWARE
MET B:334 , PRO B:342 , VAL B:360 , ASN B:363 , LEU B:364 , HOH B:2038 , HOH B:2039
BINDING SITE FOR RESIDUE EDO B1376
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CH (-|B:262-369)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CH
PS50021
Calponin homology domain profile.
PARVA_HUMAN
95-201
262-369
1
-
B:262-369
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Exons
(1, 1)
Info
All Exons
Exon 1.8 (A:1-13)
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All Exon Boundaries
1: Boundary 1.7/1.8
2: Boundary 1.8/1.12
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000228307
1
ENSE00002150335
chr12:
120703563-120703420
144
PAXI_HUMAN
1-5
5
0
-
-
1.4b
ENST00000228307
4b
ENSE00001689444
chr12:
120662180-120661954
227
PAXI_HUMAN
5-80
76
0
-
-
1.5b
ENST00000228307
5b
ENSE00001679472
chr12:
120661636-120661521
116
PAXI_HUMAN
81-119
39
0
-
-
1.6
ENST00000228307
6
ENSE00001768793
chr12:
120660802-120660666
137
PAXI_HUMAN
119-165
47
0
-
-
1.7
ENST00000228307
7
ENSE00001668346
chr12:
120660553-120660352
202
PAXI_HUMAN
165-232
68
0
-
-
1.8
ENST00000228307
8
ENSE00001756096
chr12:
120659561-120659426
136
PAXI_HUMAN
232-277
46
1
A:1-13
13
1.12
ENST00000228307
12
ENSE00001729387
chr12:
120653464-120653363
102
PAXI_HUMAN
278-311
34
0
-
-
1.13b
ENST00000228307
13b
ENSE00001653040
chr12:
120653076-120652906
171
PAXI_HUMAN
312-368
57
0
-
-
1.14
ENST00000228307
14
ENSE00001670431
chr12:
120652801-120652628
174
PAXI_HUMAN
369-426
58
0
-
-
1.15
ENST00000228307
15
ENSE00001798560
chr12:
120652020-120651939
82
PAXI_HUMAN
427-454
28
0
-
-
1.16
ENST00000228307
16
ENSE00001667198
chr12:
120651793-120651645
149
PAXI_HUMAN
454-503
50
0
-
-
1.17c
ENST00000228307
17c
ENSE00001473236
chr12:
120650383-120648251
2133
PAXI_HUMAN
504-591
88
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_CH_2vziB01 (B:265-369)
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Clans
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Clan
:
CH
(43)
Family
:
CH
(43)
Homo sapiens (Human)
(31)
1a
CH-2vziB01
B:265-369
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Asymmetric Unit 1
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