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2VZ5
Asym. Unit
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Asym.Unit (61 KB)
Biol.Unit 1 (57 KB)
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(1)
Title
:
STRUCTURE OF THE PDZ DOMAIN OF TAX1 (HUMAN T-CELL LEUKEMIA VIRUS TYPE I) BINDING PROTEIN 3
Authors
:
J. W. Murray, N. Shafqat, W. Yue, E. Pilka, C. Johannsson, E. Salah, C. Cooper, J. M. Elkins, A. C. Pike, A. Roos, P. Filippakopoulos, F. Von Delft, M. Wickstroem, C. Bountra, A. M. Edwards, C. H. Arrowsmith, U. Oppermann
Date
:
30 Jul 08 (Deposition) - 12 Aug 08 (Release) - 25 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.74
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Wnt Signaling Pathway, Protein Binding, Nucleus, Cytoplasm, Pdz Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. W. Murray, N. Shafqat, W. Yue, E. Pilka, C. Johannsson, E. Salah, C. Cooper, J. M. Elkins, A. C. Pike, A. Roos, P. Filippakopoulos, F. Von Delft, M. Wickstroem, C. Bountra, A. M. Edwards, C. H. Arrowsmith, U. Oppermann
The Structure Of The Pdz Domain Of Tax1Bp
To Be Published
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: IMIDAZOLE (IMDa)
2b: IMIDAZOLE (IMDb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
IMD
2
Ligand/Ion
IMIDAZOLE
3
ZN
2
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:62 , GLU A:67 , MET A:87 , IMD A:1130 , ZN A:1131
BINDING SITE FOR RESIDUE IMD A1129
2
AC2
SOFTWARE
GLU A:62 , GLU A:67 , ILE A:68 , ASP A:84 , IMD A:1129 , ZN A:1131
BINDING SITE FOR RESIDUE IMD A1130
3
AC3
SOFTWARE
GLU A:62 , GLU A:67 , IMD A:1129 , IMD A:1130
BINDING SITE FOR RESIDUE ZN A1131
4
AC4
SOFTWARE
HIS A:19 , GLU A:48
BINDING SITE FOR RESIDUE ZN A1132
5
AC5
SOFTWARE
HIS A:90 , HOH A:2024 , HOH A:2081
BINDING SITE FOR RESIDUE CL A1133
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_073966 (I33T, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_073966
I
33
T
TX1B3_HUMAN
Unclassified
1057517690
A
I
33
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:15-112)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
TX1B3_HUMAN
15-112
1
A:15-112
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2vz5a_ (A:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Human (Homo sapiens) [TaxId: 9606]
(71)
1a
d2vz5a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2vz5A00 (A:11-128)
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)
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)
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)
Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
1a
2vz5A00
A:11-128
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PDZ_2vz5A01 (A:17-110)
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Clans
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Organisms
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)
Clan
:
PDZ-like
(184)
Family
:
PDZ
(172)
Homo sapiens (Human)
(96)
1a
PDZ-2vz5A01
A:17-110
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Chain A
Asymmetric Unit 1
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Asym.Unit (61 KB)
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