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2VYT
Asym. Unit
Info
Asym.Unit (73 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (33 KB)
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(1)
Title
:
THE MBT REPEATS OF HUMAN SCML2 BIND TO PEPTIDES CONTAINING MONO METHYLATED LYSINE.
Authors
:
C. M. Santiveri, B. C. Lechtenberg, M. D. Allen, A. Sathyamurthy, A. M. Jaulent, S. M. V. Freund, M. Bycroft
Date
:
28 Jul 08 (Deposition) - 05 Aug 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Mono Methylated Peptides, Mbt Repeats, Transcription, Phosphoprotein, Alternative Splicing, Transcription Regulation, Nucleus, Repressor, Chromatin, Human Scml2
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. M. Santiveri, B. C. Lechtenberg, M. D. Allen, A. Sathyamurthy, A. M. Jaulent, S. M. V. Freund, M. Bycroft
The Malignant Brain Tumor Repeats Of Human Scml2 Bind To Peptides Containing Monomethylated Lysine.
J. Mol. Biol. V. 382 1107 2008
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: N-METHYL-LYSINE (MLZa)
1b: N-METHYL-LYSINE (MLZb)
2a: TRIETHYLENE GLYCOL (PGEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MLZ
2
Mod. Residue
N-METHYL-LYSINE
2
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:182 , ASN A:185 , PHE A:213 , HOH A:2104
BINDING SITE FOR RESIDUE MLZ A1244
2
AC2
SOFTWARE
VAL A:197 , GLY A:199 , LYS B:40 , GLU B:41 , ASP B:182 , TRP B:209 , PHE B:213 , HOH B:2083
BINDING SITE FOR RESIDUE MLZ B1244
3
AC3
SOFTWARE
TRP A:216 , ARG B:94 , ARG B:96
BINDING SITE FOR RESIDUE PGE B1245
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: MBT (A:33-131,B:33-126|A:139-240,B:152-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MBT
PS51079
MBT repeat profile.
SCML2_HUMAN
33-131
139-240
4
A:33-131
B:33-126
A:139-240
B:152-240
[
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Exons
(5, 10)
Info
All Exons
Exon 1.3 (A:30-31 | B:31-31)
Exon 1.4 (A:31-54 | B:31-54)
Exon 1.5 (A:55-133 | B:55-126 (gaps))
Exon 1.6 (A:133-162 | B:152-162)
Exon 1.7 (A:163-243 | B:163-243)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000251900
1a
ENSE00001341544
X:18372847-18372712
136
SCML2_HUMAN
-
0
0
-
-
1.2
ENST00000251900
2
ENSE00002195410
X:18352215-18352170
46
SCML2_HUMAN
1-8
8
0
-
-
1.3
ENST00000251900
3
ENSE00001740872
X:18348775-18348707
69
SCML2_HUMAN
8-31
24
2
A:30-31
B:31-31
2
1
1.4
ENST00000251900
4
ENSE00001722015
X:18343097-18343027
71
SCML2_HUMAN
31-54
24
2
A:31-54
B:31-54
24
24
1.5
ENST00000251900
5
ENSE00001761590
X:18342213-18341979
235
SCML2_HUMAN
55-133
79
2
A:55-133
B:55-126 (gaps)
79
72
1.6
ENST00000251900
6
ENSE00001802908
X:18338540-18338452
89
SCML2_HUMAN
133-162
30
2
A:133-162
B:152-162
30
11
1.7
ENST00000251900
7
ENSE00001780951
X:18323335-18323092
244
SCML2_HUMAN
163-244
82
2
A:163-243
B:163-243
81
81
1.8
ENST00000251900
8
ENSE00001602863
X:18283922-18283705
218
SCML2_HUMAN
244-316
73
0
-
-
1.9
ENST00000251900
9
ENSE00001692459
X:18278411-18278291
121
SCML2_HUMAN
317-357
41
0
-
-
1.10
ENST00000251900
10
ENSE00001801055
X:18276367-18276164
204
SCML2_HUMAN
357-425
69
0
-
-
1.11
ENST00000251900
11
ENSE00001720943
X:18275150-18274968
183
SCML2_HUMAN
425-486
62
0
-
-
1.12b
ENST00000251900
12b
ENSE00001776891
X:18266002-18265889
114
SCML2_HUMAN
486-524
39
0
-
-
1.13
ENST00000251900
13
ENSE00001632032
X:18264948-18264697
252
SCML2_HUMAN
524-608
85
0
-
-
1.14
ENST00000251900
14
ENSE00000666137
X:18260710-18260559
152
SCML2_HUMAN
608-658
51
0
-
-
1.15b
ENST00000251900
15b
ENSE00001765000
X:18259499-18257434
2066
SCML2_HUMAN
659-700
42
0
-
-
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2vyta1 (A:30-135)
1b: SCOP_d2vyta2 (A:140-243)
1c: SCOP_d2vytb1 (B:31-126)
1d: SCOP_d2vytb2 (B:152-243)
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Protein Domains
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(
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Organisms
(
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(
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Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
MBT repeat
(8)
Protein domain
:
Scml2 protein
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2vyta1
A:30-135
1b
d2vyta2
A:140-243
1c
d2vytb1
B:31-126
1d
d2vytb2
B:152-243
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2vytB01 (B:31-58,B:163-243)
1b: CATH_2vytA01 (A:30-58,A:163-243)
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Organisms
(
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(
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.160, no name defined]
(35)
Human (Homo sapiens)
(27)
1a
2vytB01
B:31-58,B:163-243
1b
2vytA01
A:30-58,A:163-243
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (73 KB)
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