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2VXX
Biol. Unit 1
Info
Asym.Unit (127 KB)
Biol.Unit 1 (355 KB)
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(1)
Title
:
X-RAY STRUCTURE OF DPSA FROM THERMOSYNECHOCOCCUS ELONGATUS
Authors
:
S. Franceschini, A. Ilari
Date
:
14 Jul 08 (Deposition) - 17 Nov 09 (Release) - 23 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (3x)
Keywords
:
Stress Response Protein, Dna-Binding Protein, Dps, Oxidation, Iron Binding, Ferroxidase Centre
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
F. Alaleona, S. Franceschini, P. Ceci, A. Ilari, E. Chiancone
Thermosynechococcus Elongatus Dpsa Binds Zn(Ii) At A Unique Three Histidine-Containing Ferroxidase Center And Utilizes O2 As Iron Oxidant With Very High Efficiency, Unlike The Typical Dps Proteins.
Febs J. V. 277 903 2010
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
2a: DI(HYDROXYETHYL)ETHER (PEGa)
2b: DI(HYDROXYETHYL)ETHER (PEGb)
2c: DI(HYDROXYETHYL)ETHER (PEGc)
3a: TETRAETHYLENE GLYCOL (PG4a)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FE
-1
Ligand/Ion
FE (III) ION
2
PEG
9
Ligand/Ion
DI(HYDROXYETHYL)ETHER
3
PG4
3
Ligand/Ion
TETRAETHYLENE GLYCOL
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:51 , HIS B:78 , GLU B:82 , HOH B:2055 , HOH B:2057
BINDING SITE FOR RESIDUE ZN A 201
02
AC2
SOFTWARE
HIS A:63 , GLU B:82 , HOH B:2057 , HIS C:164
BINDING SITE FOR RESIDUE ZN A 202
03
AC3
SOFTWARE
GLU A:82 , HIS B:63 , HIS B:164 , HOH B:2050
BINDING SITE FOR RESIDUE ZN B 201
04
AC4
SOFTWARE
HIS A:78 , GLU A:82 , HIS B:51 , HOH B:2041
BINDING SITE FOR RESIDUE ZN B 202
05
AC5
SOFTWARE
GLU D:140
BINDING SITE FOR RESIDUE FE B 203
06
AC6
SOFTWARE
HIS C:63 , PEG C:1177 , HOH C:2106 , GLU D:82 , HIS D:164 , HOH D:2055
BINDING SITE FOR RESIDUE ZN C 201
07
AC7
SOFTWARE
HIS C:51 , HOH C:2046 , HIS D:78 , GLU D:82 , HOH D:2055
BINDING SITE FOR RESIDUE ZN C 202
08
AC8
SOFTWARE
GLU A:140 , GLU B:140 , GLU C:140
BINDING SITE FOR RESIDUE FE C 203
09
AC9
SOFTWARE
HIS A:164 , HOH A:2100 , GLU C:82 , HIS D:63 , ZN D:202 , HOH D:2037
BINDING SITE FOR RESIDUE ZN D 201
10
BC1
SOFTWARE
HIS C:78 , GLU C:82 , HIS D:51 , ZN D:201 , HOH D:2037
BINDING SITE FOR RESIDUE ZN D 202
11
BC2
SOFTWARE
ALA A:99 , GLN B:96 , ALA B:99 , HOH B:2067 , ARG D:35 , ALA D:100 , HOH D:2030 , HOH D:2114
BINDING SITE FOR RESIDUE PEG D1177
12
BC3
SOFTWARE
PHE B:65 , ASP B:68 , GLN B:72 , LYS B:157 , GLU B:160 , ARG B:161 , HIS B:164 , HOH B:2121
BINDING SITE FOR RESIDUE PG4 B1177
13
BC4
SOFTWARE
THR B:105 , HOH B:2072
BINDING SITE FOR RESIDUE PEG B1178
14
BC5
SOFTWARE
GLN C:64 , GLN C:67 , ASP C:68 , ZN C:201 , HOH C:2106
BINDING SITE FOR RESIDUE PEG C1177
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2vxxa_ (A:)
1b: SCOP_d2vxxb_ (B:)
1c: SCOP_d2vxxc_ (C:)
1d: SCOP_d2vxxd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Synechococcus elongatus [TaxId: 32046]
(1)
1a
d2vxxa_
A:
1b
d2vxxb_
B:
1c
d2vxxc_
C:
1d
d2vxxd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2vxxA00 (A:5-176)
1b: CATH_2vxxD00 (D:5-176)
1c: CATH_2vxxB00 (B:4-176)
1d: CATH_2vxxC00 (C:4-176)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Synechococcus elongatus. Organism_taxid: 32046.
(1)
1a
2vxxA00
A:5-176
1b
2vxxD00
D:5-176
1c
2vxxB00
B:4-176
1d
2vxxC00
C:4-176
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Ferritin_2vxxD01 (D:30-174)
1b: PFAM_Ferritin_2vxxD02 (D:30-174)
1c: PFAM_Ferritin_2vxxD03 (D:30-174)
1d: PFAM_Ferritin_2vxxD04 (D:30-174)
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Clan
:
Ferritin
(185)
Family
:
Ferritin
(83)
Thermosynechococcus elongatus (strain BP-1)
(1)
1a
Ferritin-2vxxD01
D:30-174
1b
Ferritin-2vxxD02
D:30-174
1c
Ferritin-2vxxD03
D:30-174
1d
Ferritin-2vxxD04
D:30-174
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Asym.Unit (127 KB)
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