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2VXT
Asym. Unit
Info
Asym.Unit (117 KB)
Biol.Unit 1 (110 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN IL-18 COMPLEXED TO MURINE REFERENCE ANTIBODY 125-2H FAB
Authors
:
M. A. Argiriadi, T. Xiang, C. Wu, T. Ghayur, D. W. Borhani
Date
:
10 Jul 08 (Deposition) - 23 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.49
Chains
:
Asym. Unit : H,I,L
Biol. Unit 1: H,I,L (1x)
Keywords
:
Fab, Il-18, Secreted, Cytokine, Autoimmunity, Glycoprotein, Th1/Th2 Cells, Immunoglobulin Domain, Immunoglobulin V Region
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. A. Argiriadi, T. Xiang, C. Wu, T. Ghayur, D. W. Borhani
Unusual Water-Mediated Antigenic Recognition Of The Proinflammatory Cytokine Interleukin-18.
J. Biol. Chem. V. 284 24478 2009
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: MAGNESIUM ION (MGa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR H:59 , ARG H:64
BINDING SITE FOR RESIDUE CL H1214
2
AC2
SOFTWARE
HIS I:145 , ASP I:146 , ASN I:147 , LYS I:148 , HOH I:2081
BINDING SITE FOR RESIDUE CL I1193
3
AC3
SOFTWARE
HOH I:2042 , HOH I:2069 , HOH I:2070
BINDING SITE FOR RESIDUE MG I1194
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(3, 3)
Info
All Exons
Exon 1.4c (I:37-76)
Exon 1.5 (I:76-120)
Exon 1.6e (I:121-192)
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All Exon Boundaries
1: Boundary 1.3a/1.4c
2: Boundary 1.4c/1.5
3: Boundary 1.5/1.6e
4: Boundary 1.6e/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000280357
1a
ENSE00001370484
chr11:
112034840-112034629
212
IL18_HUMAN
-
0
0
-
-
1.2b
ENST00000280357
2b
ENSE00002187737
chr11:
112025784-112025698
87
IL18_HUMAN
1-27
27
0
-
-
1.3a
ENST00000280357
3a
ENSE00001682610
chr11:
112024326-112024315
12
IL18_HUMAN
27-31
5
0
-
-
1.4c
ENST00000280357
4c
ENSE00000996283
chr11:
112020929-112020795
135
IL18_HUMAN
31-76
46
1
I:37-76
40
1.5
ENST00000280357
5
ENSE00000996284
chr11:
112019459-112019326
134
IL18_HUMAN
76-120
45
1
I:76-120
45
1.6e
ENST00000280357
6e
ENSE00002192330
chr11:
112014540-112013974
567
IL18_HUMAN
121-193
73
1
I:121-192
72
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2vxti_ (I:)
2a: SCOP_d2vxtl1 (L:1-107)
3a: SCOP_d2vxtl2 (L:108-213)
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Protein Domains
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Organisms
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)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Cytokine
(169)
Family
:
Interleukin-1 (IL-1)
(44)
Protein domain
:
automated matches
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d2vxti_
I:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
2a
d2vxtl1
L:1-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Mouse (Mus musculus) [TaxId: 10090]
(309)
3a
d2vxtl2
L:108-213
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2vxtL02 (L:109-211)
1b: CATH_2vxtH02 (H:114-212)
1c: CATH_2vxtH01 (H:1-113)
2a: CATH_2vxtI00 (I:37-192)
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Organisms
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(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Mouse (Mus musculus)
(152)
1a
2vxtL02
L:109-211
1b
2vxtH02
H:114-212
1c
2vxtH01
H:1-113
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Mouse (Mus musculus)
(1)
2a
2vxtI00
I:37-192
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Pfam Domains
(0, 0)
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Chain L
Asymmetric Unit 1
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Asym.Unit (117 KB)
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