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2VXQ
Biol. Unit 1
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Asym.Unit (100 KB)
Biol.Unit 1 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MAJOR GRASS POLLEN ALLERGEN PHL P 2 IN COMPLEX WITH ITS SPECIFIC IGE-FAB
Authors
:
S. Padavattan, S. Flicker, T. Schirmer, C. Madritsch, S. Randow, G. Ree S. Vieths, C. Lupinek, C. Ebner, R. Valenta, Z. Markovic-Housley
Date
:
08 Jul 08 (Deposition) - 17 Feb 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,H,L
Biol. Unit 1: A,H,L (1x)
Keywords
:
Receptor, Secreted, Rphl P 2, Allergen, Allergen/Ige Fab Complex, Recombinant Grass Pollen Allergen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Padavattan, S. Flicker, T. Schirmer, C. Madritsch, S. Randow, G. Reese, S. Vieths, C. Lupinek, C. Ebner, R. Valenta, Z. Markovic-Housley
High-Affinity Ige Recognition Of A Conformational Epitope Of The Major Respiratory Allergen Phl P 2 As Revealed By X-Ray Crystallography.
J. Immunol. V. 182 2141 2009
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Hetero Components
(0, 0)
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Sites
(0, 0)
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_066403 (W148R, chain L, )
2: VAR_003897 (V191L, chain L, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_066403
W
40
R
IGKC_HUMAN
Disease (IGKCD)
---
L
W
148
R
2
UniProt
VAR_003897
V
83
L
IGKC_HUMAN
Unclassified
---
L
V
191
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: EXPANSIN_CBD (A:15-94)
2: IG_MHC (L:192-198)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EXPANSIN_CBD
PS50843
Expansin, Cellulose-binding-like domain profile.
MPAP2_PHLPR
41-120
1
A:15-94
2
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_HUMAN
85-91
1
L:192-198
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2vxqa_ (A:)
2a: SCOP_d2vxql1 (L:1-107)
3a: SCOP_d2vxql2 (L:108-213)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
PHL pollen allergen
(9)
Family
:
PHL pollen allergen
(5)
Protein domain
:
automated matches
(1)
Timothy grass (Phleum pratense) [TaxId: 15957]
(1)
1a
d2vxqa_
A:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
2a
d2vxql1
L:1-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
3a
d2vxql2
L:108-213
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2vxqL02 (L:108-211)
1b: CATH_2vxqH02 (H:118-214)
1c: CATH_2vxqH01 (H:1-117)
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)
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)
Organisms
(
)
(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Common timothy (Phleum pratense)
(1)
1a
2vxqL02
L:108-211
1b
2vxqH02
H:118-214
1c
2vxqH01
H:1-117
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pollen_allerg_1_2vxqA01 (A:4-83)
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)
Clan
:
no clan defined [family: Pollen_allerg_1]
(5)
Family
:
Pollen_allerg_1
(5)
Phleum pratense (Common timothy)
(5)
1a
Pollen_allerg_1-2vxqA01
A:4-83
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Asymmetric Unit 1
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Asym.Unit (100 KB)
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