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2VXO
Asym. Unit
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Asym.Unit (211 KB)
Biol.Unit 1 (206 KB)
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(1)
Title
:
HUMAN GMP SYNTHETASE IN COMPLEX WITH XMP
Authors
:
M. Welin, L. Lehtio, J. Andersson, C. H. Arrowsmith, H. Berglund, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, A. Johansson, I. Johansson, T. Karlberg, T. Kotenyova, M. Moche, M. E. Nilsson, T. Nyman, K. Olesen, C. Persson, J. Sagemark, H. Schueler, A. G. Thorsell, L. Tresaugues, S. Van Den Berg, M. Wisniewska, M. Wikstrom, P. Nordlund
Date
:
08 Jul 08 (Deposition) - 12 Aug 08 (Release) - 13 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Proto-Oncogene, Phosphoprotein, Guanine Monophosphate Synthetase, Gmp Biosynthesis, Nucleotide-Binding, Purine Biosynthesis, Nucleotide Metabolism, Gmps, Casp8, Ligase, Atp-Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. Welin, L. Lehtio, A. Johansson, S. Flodin, T. Nyman, L. Tresaugues, M. Hammarstrom, S. Graslund, P. Nordlund
Substrate Specificity And Oligomerization Of Human Gmp Synthetase
J. Mol. Biol. V. 425 4323 2013
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
2a: XANTHOSINE-5'-MONOPHOSPHATE (XMPa)
2b: XANTHOSINE-5'-MONOPHOSPHATE (XMPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
6
Ligand/Ion
SULFATE ION
2
XMP
2
Ligand/Ion
XANTHOSINE-5'-MONOPHOSPHATE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:337 , GLY A:383 , LYS A:384 , PRO A:439 , GLY A:440 , PRO A:441 , GLN A:610 , PHE A:645 , LYS A:685 , THR A:689 , THR A:690 , GLU A:691 , HOH A:2066 , HOH A:2067 , ASP B:522
BINDING SITE FOR RESIDUE XMP A1694
2
AC2
SOFTWARE
ASP A:522 , ARG B:337 , GLY B:383 , LYS B:384 , PRO B:439 , GLY B:440 , PRO B:441 , ARG B:524 , GLN B:610 , PHE B:645 , LYS B:685 , THR B:689 , THR B:690 , GLU B:691 , HOH B:2029 , HOH B:2057
BINDING SITE FOR RESIDUE XMP B1694
3
AC3
SOFTWARE
ARG A:276 , GLU A:279 , ARG A:435 , HIS A:436 , HIS A:596 , ARG A:600
BINDING SITE FOR RESIDUE SO4 A1695
4
AC4
SOFTWARE
THR A:581 , GLY A:583 , VAL A:584
BINDING SITE FOR RESIDUE SO4 A1696
5
AC5
SOFTWARE
THR B:581 , GLY B:583 , VAL B:584
BINDING SITE FOR RESIDUE SO4 B1695
6
AC6
SOFTWARE
ARG B:276 , ARG B:435 , HIS B:436 , HIS B:596 , ARG B:600
BINDING SITE FOR RESIDUE SO4 B1696
7
AC7
SOFTWARE
SER A:244 , GLY A:246 , VAL A:247 , ASP A:248 , SER A:249
BINDING SITE FOR RESIDUE SO4 A1697
8
AC8
SOFTWARE
SER B:244 , GLY B:246 , ASP B:248 , SER B:249
BINDING SITE FOR RESIDUE SO4 B1697
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GMPS_ATP_PPASE (A:217-435,B:217-435)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GMPS_ATP_PPASE
PS51553
GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile.
GUAA_HUMAN
217-435
2
A:217-435
B:217-435
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_GATase_2vxoB01 (B:29-210)
1b: PFAM_GATase_2vxoB02 (B:29-210)
2a: PFAM_NAD_synthase_2vxoB03 (B:219-332)
2b: PFAM_NAD_synthase_2vxoB04 (B:219-332)
3a: PFAM_GMP_synt_C_2vxoB05 (B:492-692)
3b: PFAM_GMP_synt_C_2vxoB06 (B:492-692)
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Clans
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Glutaminase_I
(73)
Family
:
GATase
(26)
Homo sapiens (Human)
(4)
1a
GATase-2vxoB01
B:29-210
1b
GATase-2vxoB02
B:29-210
Clan
:
HUP
(230)
Family
:
NAD_synthase
(14)
Homo sapiens (Human)
(1)
2a
NAD_synthase-2vxoB03
B:219-332
2b
NAD_synthase-2vxoB04
B:219-332
Clan
:
no clan defined [family: GMP_synt_C]
(3)
Family
:
GMP_synt_C
(3)
Homo sapiens (Human)
(1)
3a
GMP_synt_C-2vxoB05
B:492-692
3b
GMP_synt_C-2vxoB06
B:492-692
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Asymmetric Unit 1
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Asym.Unit (211 KB)
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