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2VXJ
Biol. Unit 4
Info
Asym.Unit (531 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 10 (31 KB)
Biol.Unit 11 (32 KB)
Biol.Unit 12 (32 KB)
Biol.Unit 13 (32 KB)
Biol.Unit 14 (32 KB)
Biol.Unit 15 (32 KB)
Biol.Unit 16 (32 KB)
Biol.Unit 17 (32 KB)
Biol.Unit 18 (32 KB)
Biol.Unit 19 (32 KB)
Biol.Unit 2 (31 KB)
Biol.Unit 20 (32 KB)
Biol.Unit 21 (32 KB)
Biol.Unit 22 (32 KB)
Biol.Unit 23 (32 KB)
Biol.Unit 24 (32 KB)
Biol.Unit 3 (31 KB)
Biol.Unit 4 (32 KB)
Biol.Unit 5 (32 KB)
Biol.Unit 6 (31 KB)
Biol.Unit 7 (32 KB)
Biol.Unit 8 (32 KB)
Biol.Unit 9 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PA-IL LECTIN COMPLEXED WITH AGAL13BGAL14GLC AT 1.9 A RESOLUTION
Authors
:
B. Blanchard, A. Nurisso, E. Hollville, C. Tetaud, J. Wiels, M. Pokorna M. Wimmerova, A. Varrot, A. Imberty
Date
:
04 Jul 08 (Deposition) - 16 Sep 08 (Release) - 03 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Biol. Unit 13: M (1x)
Biol. Unit 14: N (1x)
Biol. Unit 15: O (1x)
Biol. Unit 16: P (1x)
Biol. Unit 17: Q (1x)
Biol. Unit 18: R (1x)
Biol. Unit 19: S (1x)
Biol. Unit 20: T (1x)
Biol. Unit 21: U (1x)
Biol. Unit 22: V (1x)
Biol. Unit 23: W (1x)
Biol. Unit 24: X (1x)
Keywords
:
Lectin, Globoside, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Blanchard, A. Nurisso, E. Hollville, C. Tetaud, J. Wiels, M. Pokorna, M. Wimmerova, A. Varrot, A. Imberty
Structural Basis Of The Preferential Binding For Globo-Series Glycosphingolipids Displayed By Pseudomonas Aeruginosa Lectin I.
J. Mol. Biol. V. 383 837 2008
[
close entry info
]
Hetero Components
(4, 4)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
1g: BETA-D-GLUCOSE (BGCg)
1h: BETA-D-GLUCOSE (BGCh)
1i: BETA-D-GLUCOSE (BGCi)
1j: BETA-D-GLUCOSE (BGCj)
1k: BETA-D-GLUCOSE (BGCk)
1l: BETA-D-GLUCOSE (BGCl)
1m: BETA-D-GLUCOSE (BGCm)
1n: BETA-D-GLUCOSE (BGCn)
1o: BETA-D-GLUCOSE (BGCo)
1p: BETA-D-GLUCOSE (BGCp)
1q: BETA-D-GLUCOSE (BGCq)
1r: BETA-D-GLUCOSE (BGCr)
1s: BETA-D-GLUCOSE (BGCs)
1t: BETA-D-GLUCOSE (BGCt)
1u: BETA-D-GLUCOSE (BGCu)
1v: BETA-D-GLUCOSE (BGCv)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
2q: CALCIUM ION (CAq)
2r: CALCIUM ION (CAr)
2s: CALCIUM ION (CAs)
2t: CALCIUM ION (CAt)
2u: CALCIUM ION (CAu)
2v: CALCIUM ION (CAv)
2w: CALCIUM ION (CAw)
2x: CALCIUM ION (CAx)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
4a: BETA-D-GALACTOSE (GALa)
4b: BETA-D-GALACTOSE (GALb)
4c: BETA-D-GALACTOSE (GALc)
4d: BETA-D-GALACTOSE (GALd)
4e: BETA-D-GALACTOSE (GALe)
4f: BETA-D-GALACTOSE (GALf)
4g: BETA-D-GALACTOSE (GALg)
4h: BETA-D-GALACTOSE (GALh)
4i: BETA-D-GALACTOSE (GALi)
4j: BETA-D-GALACTOSE (GALj)
4k: BETA-D-GALACTOSE (GALk)
4l: BETA-D-GALACTOSE (GALl)
4m: BETA-D-GALACTOSE (GALm)
4n: BETA-D-GALACTOSE (GALn)
4o: BETA-D-GALACTOSE (GALo)
4p: BETA-D-GALACTOSE (GALp)
4q: BETA-D-GALACTOSE (GALq)
4r: BETA-D-GALACTOSE (GALr)
4s: BETA-D-GALACTOSE (GALs)
4t: BETA-D-GALACTOSE (GALt)
4u: BETA-D-GALACTOSE (GALu)
4v: BETA-D-GALACTOSE (GALv)
4w: BETA-D-GALACTOSE (GALw)
4x: BETA-D-GALACTOSE (GALx)
5a: ALPHA D-GALACTOSE (GLAa)
5b: ALPHA D-GALACTOSE (GLAb)
5c: ALPHA D-GALACTOSE (GLAc)
5d: ALPHA D-GALACTOSE (GLAd)
5e: ALPHA D-GALACTOSE (GLAe)
5f: ALPHA D-GALACTOSE (GLAf)
5g: ALPHA D-GALACTOSE (GLAg)
5h: ALPHA D-GALACTOSE (GLAh)
5i: ALPHA D-GALACTOSE (GLAi)
5j: ALPHA D-GALACTOSE (GLAj)
5k: ALPHA D-GALACTOSE (GLAk)
5l: ALPHA D-GALACTOSE (GLAl)
5m: ALPHA D-GALACTOSE (GLAm)
5n: ALPHA D-GALACTOSE (GLAn)
5o: ALPHA D-GALACTOSE (GLAo)
5p: ALPHA D-GALACTOSE (GLAp)
5q: ALPHA D-GALACTOSE (GLAq)
5r: ALPHA D-GALACTOSE (GLAr)
5s: ALPHA D-GALACTOSE (GLAs)
5t: ALPHA D-GALACTOSE (GLAt)
5u: ALPHA D-GALACTOSE (GLAu)
5v: ALPHA D-GALACTOSE (GLAv)
5w: ALPHA D-GALACTOSE (GLAw)
5x: ALPHA D-GALACTOSE (GLAx)
6a: ALPHA-D-GLUCOSE (GLCa)
6b: ALPHA-D-GLUCOSE (GLCb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
4
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
5
GLA
1
Ligand/Ion
ALPHA D-GALACTOSE
6
GLC
-1
Ligand/Ion
ALPHA-D-GLUCOSE
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: FC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
TYR D:36 , ASP D:100 , THR D:104 , ASN D:107 , ASN D:108 , GLA D:201
BINDING SITE FOR RESIDUE CA D 200
2
AC6
SOFTWARE
GLY C:43 , PRO C:44 , GLN C:45 , THR C:79 , HOH C:2051 , GLY D:43 , PRO D:44 , GLN D:45 , THR D:79 , HOH D:2055
BINDING SITE FOR RESIDUE EDO D1122
3
FC3
SOFTWARE
TYR D:36 , HIS D:50 , GLN D:53 , ASP D:100 , THR D:104 , ASN D:107 , CA D:200 , HOH D:2064 , HOH D:2120 , HOH D:2121 , HOH D:2122 , HOH D:2123
BINDING SITE FOR CHAIN D OF POLYSACCHARIDE RESIDUES 201 TO 203
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d2vxja_ (A:)
1b: SCOP_d2vxjb_ (B:)
1c: SCOP_d2vxjc_ (C:)
1d: SCOP_d2vxjd_ (D:)
1e: SCOP_d2vxje_ (E:)
1f: SCOP_d2vxjf_ (F:)
1g: SCOP_d2vxjg_ (G:)
1h: SCOP_d2vxjh_ (H:)
1i: SCOP_d2vxji_ (I:)
1j: SCOP_d2vxjj_ (J:)
1k: SCOP_d2vxjk_ (K:)
1l: SCOP_d2vxjl_ (L:)
1m: SCOP_d2vxjm_ (M:)
1n: SCOP_d2vxjn_ (N:)
1o: SCOP_d2vxjo_ (O:)
1p: SCOP_d2vxjp_ (P:)
1q: SCOP_d2vxjq_ (Q:)
1r: SCOP_d2vxjr_ (R:)
1s: SCOP_d2vxjs_ (S:)
1t: SCOP_d2vxjt_ (T:)
1u: SCOP_d2vxju_ (U:)
1v: SCOP_d2vxjv_ (V:)
1w: SCOP_d2vxjw_ (W:)
1x: SCOP_d2vxjx_ (X:)
View:
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Classes
(
)
(
)
Folds
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(
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(
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(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
PA-IL, galactose-binding lectin 1
(12)
Protein domain
:
PA-IL, galactose-binding lectin 1
(12)
Pseudomonas aeruginosa [TaxId: 287]
(12)
1a
d2vxja_
A:
1b
d2vxjb_
B:
1c
d2vxjc_
C:
1d
d2vxjd_
D:
1e
d2vxje_
E:
1f
d2vxjf_
F:
1g
d2vxjg_
G:
1h
d2vxjh_
H:
1i
d2vxji_
I:
1j
d2vxjj_
J:
1k
d2vxjk_
K:
1l
d2vxjl_
L:
1m
d2vxjm_
M:
1n
d2vxjn_
N:
1o
d2vxjo_
O:
1p
d2vxjp_
P:
1q
d2vxjq_
Q:
1r
d2vxjr_
R:
1s
d2vxjs_
S:
1t
d2vxjt_
T:
1u
d2vxju_
U:
1v
d2vxjv_
V:
1w
d2vxjw_
W:
1x
d2vxjx_
X:
[
close SCOP info
]
CATH Domains
(1, 24)
Info
all CATH domains
1a: CATH_2vxjA00 (A:1-121)
1b: CATH_2vxjE00 (E:1-121)
1c: CATH_2vxjP00 (P:1-121)
1d: CATH_2vxjQ00 (Q:1-121)
1e: CATH_2vxjR00 (R:1-121)
1f: CATH_2vxjS00 (S:1-121)
1g: CATH_2vxjT00 (T:1-121)
1h: CATH_2vxjU00 (U:1-121)
1i: CATH_2vxjV00 (V:1-121)
1j: CATH_2vxjW00 (W:1-121)
1k: CATH_2vxjX00 (X:1-121)
1l: CATH_2vxjD00 (D:1-121)
1m: CATH_2vxjF00 (F:1-121)
1n: CATH_2vxjJ00 (J:1-121)
1o: CATH_2vxjN00 (N:1-121)
1p: CATH_2vxjC00 (C:1-121)
1q: CATH_2vxjB00 (B:1-121)
1r: CATH_2vxjG00 (G:1-121)
1s: CATH_2vxjH00 (H:1-121)
1t: CATH_2vxjI00 (I:1-121)
1u: CATH_2vxjK00 (K:1-121)
1v: CATH_2vxjL00 (L:1-121)
1w: CATH_2vxjM00 (M:1-121)
1x: CATH_2vxjO00 (O:1-121)
View:
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Classes
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)
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)
Architectures
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)
(
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding lectin
(5)
Pseudomonas aeruginosa. Organism_taxid: 208964. Strain: pao1.
(2)
1a
2vxjA00
A:1-121
1b
2vxjE00
E:1-121
1c
2vxjP00
P:1-121
1d
2vxjQ00
Q:1-121
1e
2vxjR00
R:1-121
1f
2vxjS00
S:1-121
1g
2vxjT00
T:1-121
1h
2vxjU00
U:1-121
1i
2vxjV00
V:1-121
1j
2vxjW00
W:1-121
1k
2vxjX00
X:1-121
1l
2vxjD00
D:1-121
1m
2vxjF00
F:1-121
1n
2vxjJ00
J:1-121
1o
2vxjN00
N:1-121
1p
2vxjC00
C:1-121
1q
2vxjB00
B:1-121
1r
2vxjG00
G:1-121
1s
2vxjH00
H:1-121
1t
2vxjI00
I:1-121
1u
2vxjK00
K:1-121
1v
2vxjL00
L:1-121
1w
2vxjM00
M:1-121
1x
2vxjO00
O:1-121
[
close CATH info
]
Pfam Domains
(1, 24)
Info
all PFAM domains
1a: PFAM_PA_IL_2vxjX01 (X:1-121)
1b: PFAM_PA_IL_2vxjX02 (X:1-121)
1c: PFAM_PA_IL_2vxjX03 (X:1-121)
1d: PFAM_PA_IL_2vxjX04 (X:1-121)
1e: PFAM_PA_IL_2vxjX05 (X:1-121)
1f: PFAM_PA_IL_2vxjX06 (X:1-121)
1g: PFAM_PA_IL_2vxjX07 (X:1-121)
1h: PFAM_PA_IL_2vxjX08 (X:1-121)
1i: PFAM_PA_IL_2vxjX09 (X:1-121)
1j: PFAM_PA_IL_2vxjX10 (X:1-121)
1k: PFAM_PA_IL_2vxjX11 (X:1-121)
1l: PFAM_PA_IL_2vxjX12 (X:1-121)
1m: PFAM_PA_IL_2vxjX13 (X:1-121)
1n: PFAM_PA_IL_2vxjX14 (X:1-121)
1o: PFAM_PA_IL_2vxjX15 (X:1-121)
1p: PFAM_PA_IL_2vxjX16 (X:1-121)
1q: PFAM_PA_IL_2vxjX17 (X:1-121)
1r: PFAM_PA_IL_2vxjX18 (X:1-121)
1s: PFAM_PA_IL_2vxjX19 (X:1-121)
1t: PFAM_PA_IL_2vxjX20 (X:1-121)
1u: PFAM_PA_IL_2vxjX21 (X:1-121)
1v: PFAM_PA_IL_2vxjX22 (X:1-121)
1w: PFAM_PA_IL_2vxjX23 (X:1-121)
1x: PFAM_PA_IL_2vxjX24 (X:1-121)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GBD
(153)
Family
:
PA-IL
(5)
Pseudomonas aeruginosa
(5)
1a
PA-IL-2vxjX01
X:1-121
1b
PA-IL-2vxjX02
X:1-121
1c
PA-IL-2vxjX03
X:1-121
1d
PA-IL-2vxjX04
X:1-121
1e
PA-IL-2vxjX05
X:1-121
1f
PA-IL-2vxjX06
X:1-121
1g
PA-IL-2vxjX07
X:1-121
1h
PA-IL-2vxjX08
X:1-121
1i
PA-IL-2vxjX09
X:1-121
1j
PA-IL-2vxjX10
X:1-121
1k
PA-IL-2vxjX11
X:1-121
1l
PA-IL-2vxjX12
X:1-121
1m
PA-IL-2vxjX13
X:1-121
1n
PA-IL-2vxjX14
X:1-121
1o
PA-IL-2vxjX15
X:1-121
1p
PA-IL-2vxjX16
X:1-121
1q
PA-IL-2vxjX17
X:1-121
1r
PA-IL-2vxjX18
X:1-121
1s
PA-IL-2vxjX19
X:1-121
1t
PA-IL-2vxjX20
X:1-121
1u
PA-IL-2vxjX21
X:1-121
1v
PA-IL-2vxjX22
X:1-121
1w
PA-IL-2vxjX23
X:1-121
1x
PA-IL-2vxjX24
X:1-121
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Chain D
Asymmetric Unit 1
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Asym.Unit (531 KB)
Header - Asym.Unit
Biol.Unit 1 (32 KB)
Header - Biol.Unit 1
Biol.Unit 10 (31 KB)
Header - Biol.Unit 10
Biol.Unit 11 (32 KB)
Header - Biol.Unit 11
Biol.Unit 12 (32 KB)
Header - Biol.Unit 12
Biol.Unit 13 (32 KB)
Header - Biol.Unit 13
Biol.Unit 14 (32 KB)
Header - Biol.Unit 14
Biol.Unit 15 (32 KB)
Header - Biol.Unit 15
Biol.Unit 16 (32 KB)
Header - Biol.Unit 16
Biol.Unit 17 (32 KB)
Header - Biol.Unit 17
Biol.Unit 18 (32 KB)
Header - Biol.Unit 18
Biol.Unit 19 (32 KB)
Header - Biol.Unit 19
Biol.Unit 2 (31 KB)
Header - Biol.Unit 2
Biol.Unit 20 (32 KB)
Header - Biol.Unit 20
Biol.Unit 21 (32 KB)
Header - Biol.Unit 21
Biol.Unit 22 (32 KB)
Header - Biol.Unit 22
Biol.Unit 23 (32 KB)
Header - Biol.Unit 23
Biol.Unit 24 (32 KB)
Header - Biol.Unit 24
Biol.Unit 3 (31 KB)
Header - Biol.Unit 3
Biol.Unit 4 (32 KB)
Header - Biol.Unit 4
Biol.Unit 5 (32 KB)
Header - Biol.Unit 5
Biol.Unit 6 (31 KB)
Header - Biol.Unit 6
Biol.Unit 7 (32 KB)
Header - Biol.Unit 7
Biol.Unit 8 (32 KB)
Header - Biol.Unit 8
Biol.Unit 9 (32 KB)
Header - Biol.Unit 9
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