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2VXA
Asym. Unit
Info
Asym.Unit (144 KB)
Biol.Unit 1 (135 KB)
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(1)
Title
:
H.HALOPHILA DODECIN IN COMPLEX WITH RIBOFLAVIN
Authors
:
M. Grininger, H. Staudt, P. Johansson, J. Wachtveitl, D. Oesterhelt
Date
:
01 Jul 08 (Deposition) - 17 Feb 09 (Release) - 22 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Flavoprotein, Dodecin, Flavin, Riboflavin, Lumichrome, Archaea
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Grininger, H. Staudtb, P. Johansson, J. Wachtveitl, D. Oesterhelt
Dodecin Is The Key Player In Flavin Homeostasis Of Archaea.
J. Biol. Chem. V. 284 13068 2009
[
close entry info
]
Hetero Components
(2, 36)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
1x: CHLORIDE ION (CLx)
2a: RIBOFLAVIN (RBFa)
2b: RIBOFLAVIN (RBFb)
2c: RIBOFLAVIN (RBFc)
2d: RIBOFLAVIN (RBFd)
2e: RIBOFLAVIN (RBFe)
2f: RIBOFLAVIN (RBFf)
2g: RIBOFLAVIN (RBFg)
2h: RIBOFLAVIN (RBFh)
2i: RIBOFLAVIN (RBFi)
2j: RIBOFLAVIN (RBFj)
2k: RIBOFLAVIN (RBFk)
2l: RIBOFLAVIN (RBFl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
24
Ligand/Ion
CHLORIDE ION
2
RBF
12
Ligand/Ion
RIBOFLAVIN
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:6 , ARG A:38 , TRP A:39 , GLN C:58 , ARG E:46 , HIS E:48 , GLN E:58 , RBF F:200
BINDING SITE FOR RESIDUE RBF A 200
02
AC2
SOFTWARE
GLN A:58 , TYR B:6 , ARG B:38 , TRP B:39 , ARG K:46 , HIS K:48 , GLN K:58 , RBF L:200
BINDING SITE FOR RESIDUE RBF B 200
03
AC3
SOFTWARE
GLN B:58 , TYR C:6 , ARG C:38 , TRP C:39 , ARG G:46 , HIS G:48 , GLN G:58 , RBF H:200
BINDING SITE FOR RESIDUE RBF C 200
04
AC4
SOFTWARE
TYR D:6 , ARG D:38 , TRP D:39 , GLN F:58 , RBF G:200 , ARG I:46 , HIS I:48 , GLN I:58
BINDING SITE FOR RESIDUE RBF D 200
05
AC5
SOFTWARE
GLN D:58 , TYR E:6 , ARG E:38 , TRP E:39 , CL E:1070 , RBF J:200 , ARG L:46 , HIS L:48 , GLN L:58
BINDING SITE FOR RESIDUE RBF E 200
06
AC6
SOFTWARE
RBF A:200 , ARG C:46 , HIS C:48 , GLN C:58 , GLN E:58 , TYR F:6 , TRP F:39 , ASN I:17
BINDING SITE FOR RESIDUE RBF F 200
07
AC7
SOFTWARE
ASN B:17 , RBF D:200 , ARG F:46 , HIS F:48 , GLN F:58 , TYR G:6 , ARG G:38 , TRP G:39 , GLN I:58
BINDING SITE FOR RESIDUE RBF G 200
08
AC8
SOFTWARE
ARG B:46 , HIS B:48 , GLN B:58 , RBF C:200 , GLN G:58 , TYR H:6 , ARG H:38 , TRP H:39
BINDING SITE FOR RESIDUE RBF H 200
09
AC9
SOFTWARE
GLN H:58 , TYR I:6 , ARG I:38 , TRP I:39 , ARG J:46 , HIS J:48 , GLN J:58 , RBF K:200
BINDING SITE FOR RESIDUE RBF I 200
10
BC1
SOFTWARE
ARG D:46 , HIS D:48 , GLN D:58 , RBF E:200 , TYR J:6 , ARG J:38 , TRP J:39 , GLN L:58
BINDING SITE FOR RESIDUE RBF J 200
11
BC2
SOFTWARE
ARG H:46 , HIS H:48 , GLN H:58 , RBF I:200 , GLN J:58 , TYR K:6 , ARG K:38 , TRP K:39
BINDING SITE FOR RESIDUE RBF K 200
12
BC3
SOFTWARE
ARG A:46 , HIS A:48 , GLN A:58 , RBF B:200 , GLN K:58 , TYR L:6 , ARG L:38 , TRP L:39
BINDING SITE FOR RESIDUE RBF L 200
13
BC4
SOFTWARE
LYS A:7 , LYS B:7 , LYS C:7
BINDING SITE FOR RESIDUE CL A1069
14
BC5
SOFTWARE
ARG B:46 , TRP H:39
BINDING SITE FOR RESIDUE CL B1069
15
BC6
SOFTWARE
TRP C:39 , ARG G:46
BINDING SITE FOR RESIDUE CL G1069
16
BC7
SOFTWARE
TRP B:39 , ARG K:46
BINDING SITE FOR RESIDUE CL K1069
17
BC8
SOFTWARE
TRP A:39 , ARG E:46
BINDING SITE FOR RESIDUE CL E1069
18
BC9
SOFTWARE
ARG H:46 , TRP K:39
BINDING SITE FOR RESIDUE CL H1069
19
CC1
SOFTWARE
ARG F:46
BINDING SITE FOR RESIDUE CL F1069
20
CC2
SOFTWARE
TRP E:39 , RBF E:200 , ARG L:46
BINDING SITE FOR RESIDUE CL E1070
21
CC3
SOFTWARE
TRP D:39 , ARG I:46
BINDING SITE FOR RESIDUE CL I1069
22
CC4
SOFTWARE
ARG C:46 , TRP F:39
BINDING SITE FOR RESIDUE CL C1069
23
CC5
SOFTWARE
TRP I:39 , ARG J:46
BINDING SITE FOR RESIDUE CL J1069
24
CC6
SOFTWARE
SER J:14 , HIS K:4 , TYR K:6
BINDING SITE FOR RESIDUE CL K1070
25
CC7
SOFTWARE
HIS D:4 , TYR D:6 , SER F:14 , GLN F:58
BINDING SITE FOR RESIDUE CL D1069
26
CC8
SOFTWARE
SER E:14 , HIS E:56 , GLN E:58 , HIS F:4 , TYR F:6
BINDING SITE FOR RESIDUE CL E1071
27
CC9
SOFTWARE
SER H:14 , GLN H:58 , HIS I:4 , TYR I:6
BINDING SITE FOR RESIDUE CL I1070
28
DC1
SOFTWARE
SER B:14 , HIS B:56 , GLN B:58 , HIS C:4 , TYR C:6
BINDING SITE FOR RESIDUE CL B1070
29
DC2
SOFTWARE
SER G:14 , GLN G:58 , TYR H:6
BINDING SITE FOR RESIDUE CL G1070
30
DC3
SOFTWARE
TYR A:6 , SER C:14 , GLN C:58
BINDING SITE FOR RESIDUE CL C1070
31
DC4
SOFTWARE
TYR G:6 , SER I:14 , GLN I:58
BINDING SITE FOR RESIDUE CL G1071
32
DC5
SOFTWARE
SER D:14 , GLN D:58 , TYR E:6
BINDING SITE FOR RESIDUE CL D1070
33
DC6
SOFTWARE
GLU A:10 , LYS A:62 , GLU B:10 , LYS B:62 , GLU C:10 , LYS C:62
BINDING SITE FOR RESIDUE CL A1070
34
DC7
SOFTWARE
GLU J:10 , LYS J:62 , GLU K:10 , LYS K:62 , GLU L:10 , LYS L:62
BINDING SITE FOR RESIDUE CL J1070
35
DC8
SOFTWARE
GLU G:10 , LYS G:62 , GLU H:10 , LYS H:62 , GLU I:10 , LYS I:62
BINDING SITE FOR RESIDUE CL G1072
36
DC9
SOFTWARE
GLU D:10 , LYS D:62 , GLU E:10 , LYS E:62 , GLU F:10 , LYS F:62
BINDING SITE FOR RESIDUE CL D1071
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2vxaa_ (A:)
1b: SCOP_d2vxab_ (B:)
1c: SCOP_d2vxak_ (K:)
1d: SCOP_d2vxal_ (L:)
1e: SCOP_d2vxac_ (C:)
1f: SCOP_d2vxad_ (D:)
1g: SCOP_d2vxae_ (E:)
1h: SCOP_d2vxaf_ (F:)
1i: SCOP_d2vxag_ (G:)
1j: SCOP_d2vxah_ (H:)
1k: SCOP_d2vxai_ (I:)
1l: SCOP_d2vxaj_ (J:)
View:
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(
)
(
)
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Dodecin subunit-like
(56)
Superfamily
:
Dodecin-like
(33)
Family
:
automated matches
(4)
Protein domain
:
automated matches
(4)
Halorhodospira halophila [TaxId: 1053]
(1)
1a
d2vxaa_
A:
1b
d2vxab_
B:
1c
d2vxak_
K:
1d
d2vxal_
L:
1e
d2vxac_
C:
1f
d2vxad_
D:
1g
d2vxae_
E:
1h
d2vxaf_
F:
1i
d2vxag_
G:
1j
d2vxah_
H:
1k
d2vxai_
I:
1l
d2vxaj_
J:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2vxaA00 (A:3-69)
1b: CATH_2vxaB00 (B:3-69)
1c: CATH_2vxaK00 (K:3-69)
1d: CATH_2vxaL00 (L:3-69)
1e: CATH_2vxaC00 (C:3-69)
1f: CATH_2vxaD00 (D:3-69)
1g: CATH_2vxaE00 (E:3-69)
1h: CATH_2vxaF00 (F:3-69)
1i: CATH_2vxaG00 (G:3-69)
1j: CATH_2vxaH00 (H:3-69)
1k: CATH_2vxaI00 (I:3-69)
1l: CATH_2vxaJ00 (J:3-69)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dodecin subunit-like
(24)
Homologous Superfamily
:
Flavin-binding protein dodecin
(24)
Halorhodospira halophila. Organism_taxid: 1053.
(1)
1a
2vxaA00
A:3-69
1b
2vxaB00
B:3-69
1c
2vxaK00
K:3-69
1d
2vxaL00
L:3-69
1e
2vxaC00
C:3-69
1f
2vxaD00
D:3-69
1g
2vxaE00
E:3-69
1h
2vxaF00
F:3-69
1i
2vxaG00
G:3-69
1j
2vxaH00
H:3-69
1k
2vxaI00
I:3-69
1l
2vxaJ00
J:3-69
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain H
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Chain J
Chain K
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