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2VX9
Asym. Unit
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Asym.Unit (21 KB)
Biol.Unit 1 (142 KB)
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(1)
Title
:
H. SALINARUM DODECIN E45A MUTANT
Authors
:
M. Grininger, H. Staudt, P. Johansson, J. Wachtveitl, D. Oesterhelt
Date
:
01 Jul 08 (Deposition) - 17 Feb 09 (Release) - 22 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (12x)
Keywords
:
Flavoprotein, Flavin, Archaea, Dodecin, Riboflavin, Lumichrome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Grininger, H. Staudt, P. Johansson, J. Wachtveitl, D. Oesterhelt
Dodecin Is The Key Player In Flavin Homeostasis Of Archaea.
J. Biol. Chem. V. 284 13068 2009
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
3a: RIBOFLAVIN (RBFa)
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No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
NA
4
Ligand/Ion
SODIUM ION
3
RBF
1
Ligand/Ion
RIBOFLAVIN
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:3 , VAL A:35 , TRP A:36 , VAL A:44 , ALA A:45 , ALA A:48 , GLN A:55 , NA A:1066 , HOH A:2046 , HOH A:2069
BINDING SITE FOR RESIDUE RBF A1064
2
AC2
SOFTWARE
GLU A:14 , HOH A:2020 , HOH A:2025 , HOH A:2027 , HOH A:2033 , HOH A:2056
BINDING SITE FOR RESIDUE NA A1065
3
AC3
SOFTWARE
ASP A:41 , HOH A:2046
BINDING SITE FOR RESIDUE NA A1071
4
AC4
SOFTWARE
VAL A:35 , ALA A:45 , ILE A:46 , GLY A:47 , ALA A:48 , RBF A:1064
BINDING SITE FOR RESIDUE NA A1066
5
AC5
SOFTWARE
CL A:1068 , CL A:1069 , HOH A:2065
BINDING SITE FOR RESIDUE NA A1067
6
AC6
SOFTWARE
GLN A:59 , NA A:1067 , HOH A:2032
BINDING SITE FOR RESIDUE CL A1068
7
AC7
SOFTWARE
NA A:1067 , HOH A:2007
BINDING SITE FOR RESIDUE CL A1069
8
AC8
SOFTWARE
SER A:15 , THR A:17 , HOH A:2023
BINDING SITE FOR RESIDUE CL A1070
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2vx9a_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Dodecin subunit-like
(56)
Superfamily
:
Dodecin-like
(33)
Family
:
Dodecin-like
(29)
Protein domain
:
automated matches
(24)
Halobacterium salinarum [TaxId: 478009]
(12)
1a
d2vx9a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2vx9A00 (A:2-64)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dodecin subunit-like
(24)
Homologous Superfamily
:
Flavin-binding protein dodecin
(24)
Halobacterium salinarum r1. Organism_taxid: 478009.
(1)
1a
2vx9A00
A:2-64
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (21 KB)
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