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2VW5
Biol. Unit 2
Info
Asym.Unit (296 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (75 KB)
Biol.Unit 3 (75 KB)
Biol.Unit 4 (75 KB)
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(1)
Title
:
STRUCTURE OF THE HSP90 INHIBITOR 7-O-CARBAMOYLPREMACBECIN BOUND TO THE N- TERMINUS OF YEAST HSP90
Authors
:
S. M. Roe, C. Prodromou, L. H. Pearl
Date
:
16 Jun 08 (Deposition) - 02 Sep 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Atpase, Cytoplasm, Inhibitor, Chaperone, Atp-Binding, Stress Response, Nucleotide-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Q. Zhang, S. Gaisser, M. Nur-E-Alam, L. S. Sheehan, W. A. Vousden, N. Gaitatzis, G. Peck, N. J. Coates, S. J. Moss, M. Radzom, T. A. Foster, R. M. Sheridan, M. A. Gregory, S. M. Roe, C. Prodromou, L. H. Pearl, S. M. Boyd, B. Wilkinson, C. J. Martin
Optimizing Natural Products By Biosynthetic Engineering: Discovery Of Nonquinone Hsp90 Inhibitors.
J. Med. Chem. V. 51 5494 2008
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: (4E,8S,9R,10E,12S,13R,14S,16R)-13,... (BC6a)
1b: (4E,8S,9R,10E,12S,13R,14S,16R)-13,... (BC6b)
1c: (4E,8S,9R,10E,12S,13R,14S,16R)-13,... (BC6c)
1d: (4E,8S,9R,10E,12S,13R,14S,16R)-13,... (BC6d)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BC6
1
Ligand/Ion
(4E,8S,9R,10E,12S,13R,14S,16R)-13,20-DIHYDROXY-14-METHOXY-4,8,10,12,16-PENTAMETHYL-3-OXO-2-AZABICYCLO[16.3.1]DOCOSA-1(22),4,10,18,20-PENTAEN-9-YL CARBAMATE
2
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC9 (SOFTWARE)
4: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ASN B:37 , ASP B:40 , ALA B:41 , ASP B:79 , ILE B:82 , GLU B:88 , ASN B:92 , LEU B:93 , GLY B:121 , VAL B:122 , GLY B:123 , PHE B:124 , THR B:171 , HOH B:2028 , HOH B:2062 , HOH B:2124 , HOH B:2125 , HOH B:2126
BINDING SITE FOR RESIDUE BC6 B 500
2
AC6
SOFTWARE
LYS B:69 , GLN B:72 , ARG C:78 , GLU C:165
BINDING SITE FOR RESIDUE SO4 C1215
3
AC9
SOFTWARE
ARG B:65 , ARG B:78 , GLU B:165 , LYS C:69
BINDING SITE FOR RESIDUE SO4 B1215
4
BC3
SOFTWARE
LYS B:98 , SER B:99 , HOH B:2069 , LYS C:102
BINDING SITE FOR RESIDUE SO4 B1216
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HSP90 (B:24-33)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HSP90
PS00298
Heat shock hsp90 proteins family signature.
HSP82_YEAST
24-33
1
-
B:24-33
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2vw5a_ (A:)
1b: SCOP_d2vw5b_ (B:)
1c: SCOP_d2vw5c_ (C:)
1d: SCOP_d2vw5d_ (D:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
(364)
Superfamily
:
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
(364)
Family
:
Heat shock protein 90, HSP90, N-terminal domain
(238)
Protein domain
:
HSP90
(126)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(31)
1a
d2vw5a_
A:
1b
d2vw5b_
B:
1c
d2vw5c_
C:
1d
d2vw5d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2vw5A00 (A:1-214)
1b: CATH_2vw5B00 (B:1-214)
1c: CATH_2vw5C00 (C:1-214)
1d: CATH_2vw5D00 (D:1-214)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Heat Shock Protein 90
(209)
Homologous Superfamily
:
[code=3.30.565.10, no name defined]
(205)
Baker's yeast (Saccharomyces cerevisiae)
(27)
1a
2vw5A00
A:1-214
1b
2vw5B00
B:1-214
1c
2vw5C00
C:1-214
1d
2vw5D00
D:1-214
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_HATPase_c_2vw5D01 (D:26-180)
1b: PFAM_HATPase_c_2vw5D02 (D:26-180)
1c: PFAM_HATPase_c_2vw5D03 (D:26-180)
1d: PFAM_HATPase_c_2vw5D04 (D:26-180)
2a: PFAM_HSP90_2vw5D05 (D:183-214)
2b: PFAM_HSP90_2vw5D06 (D:183-214)
2c: PFAM_HSP90_2vw5D07 (D:183-214)
2d: PFAM_HSP90_2vw5D08 (D:183-214)
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Clan
:
His_Kinase_A
(147)
Family
:
HATPase_c
(132)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
1a
HATPase_c-2vw5D01
D:26-180
1b
HATPase_c-2vw5D02
D:26-180
1c
HATPase_c-2vw5D03
D:26-180
1d
HATPase_c-2vw5D04
D:26-180
Clan
:
no clan defined [family: HSP90]
(107)
Family
:
HSP90
(107)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
2a
HSP90-2vw5D05
D:183-214
2b
HSP90-2vw5D06
D:183-214
2c
HSP90-2vw5D07
D:183-214
2d
HSP90-2vw5D08
D:183-214
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (296 KB)
Header - Asym.Unit
Biol.Unit 1 (75 KB)
Header - Biol.Unit 1
Biol.Unit 2 (75 KB)
Header - Biol.Unit 2
Biol.Unit 3 (75 KB)
Header - Biol.Unit 3
Biol.Unit 4 (75 KB)
Header - Biol.Unit 4
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