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2VVT
Asym. Unit
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Asym.Unit (104 KB)
Biol.Unit 1 (98 KB)
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(1)
Title
:
GLUTAMATE RACEMASE (MURI) FROM E. FAECALIS IN COMPLEX WITH A 9-BENZYL PURINE INHIBITOR
Authors
:
B. Geng, G. Breault, J. Comita-Prevoir, R. Petrichko, C. Eyermann, T. Lundqvist, P. Doig, E. Gorseth, B. Noonan
Date
:
11 Jun 08 (Deposition) - 24 Jun 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Isomerase, Glutamate Racemase, Peptidoglycan Synthesis, Cell Wall Biogenesis/Degradation, Cell Shape, Benzyl Purine, Muri Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Geng, G. Breault, J. Comita-Prevoir, R. Petrichko, C. Eyermann, T. Lundqvist, P. Doig, E. Gorseth, B. Noonan
Exploring 9-Benzyl Purines As Inhibitors Of Glutamate Racemase (Muri) In Gram-Positive Bacteria.
Bioorg. Med. Chem. Lett. V. 18 4368 2008
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: D-GLUTAMIC ACID (DGLa)
1b: D-GLUTAMIC ACID (DGLb)
2a: 2-BUTOXY-9-(2,6-DIFLUOROBENZYL)-N-... (I24a)
2b: 2-BUTOXY-9-(2,6-DIFLUOROBENZYL)-N-... (I24b)
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No.
Name
Count
Type
Full Name
1
DGL
2
Ligand/Ion
D-GLUTAMIC ACID
2
I24
2
Ligand/Ion
2-BUTOXY-9-(2,6-DIFLUOROBENZYL)-N-(2-MORPHOLIN-4-YLETHYL)-9H-PURIN-6-AMINE
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Sites
(4, 4)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:14 , VAL A:152 , GLU A:153 , ASN A:155 , HIS A:187 , LEU A:190 , MET A:246 , ILE A:250 , HOH A:2194 , HOH A:2313 , HOH A:2314
BINDING SITE FOR RESIDUE I24 A1269
2
AC2
SOFTWARE
ASN A:197 , GLY A:200 , SER A:201 , HIS A:202 , HOH A:2235 , VAL B:152 , GLU B:153 , ASN B:155 , GLU B:249 , ILE B:250 , HOH B:2355 , HOH B:2386
BINDING SITE FOR RESIDUE I24 B1269
3
AC3
SOFTWARE
ASP A:11 , SER A:12 , PRO A:42 , TYR A:43 , GLY A:44 , CYS A:74 , ASN A:75 , THR A:76 , THR A:118 , CYS A:185 , THR A:186 , HOH A:2021 , HOH A:2230 , HOH A:2315
BINDING SITE FOR RESIDUE DGL A1270
4
AC4
SOFTWARE
ASP B:11 , SER B:12 , PRO B:42 , TYR B:43 , GLY B:44 , CYS B:74 , ASN B:75 , THR B:76 , THR B:118 , CYS B:185 , THR B:186 , HIS B:187 , HOH B:2282 , HOH B:2388
BINDING SITE FOR RESIDUE DGL B1270
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ASP_GLU_RACEMASE_1 (A:71-79,B:71-79)
2: ASP_GLU_RACEMASE_2 (A:181-191,B:181-191)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASP_GLU_RACEMASE_1
PS00923
Aspartate and glutamate racemases signature 1.
MURI_ENTFA
71-79
2
A:71-79
B:71-79
2
ASP_GLU_RACEMASE_2
PS00924
Aspartate and glutamate racemases signature 2.
MURI_ENTFA
181-191
2
A:181-191
B:181-191
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Exons
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Asp_Glu_race_2vvtB01 (B:7-217)
1b: PFAM_Asp_Glu_race_2vvtB02 (B:7-217)
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Clan
:
Asp-glut_race
(23)
Family
:
Asp_Glu_race
(23)
Enterococcus faecalis (Streptococcus faecalis)
(2)
1a
Asp_Glu_race-2vvtB01
B:7-217
1b
Asp_Glu_race-2vvtB02
B:7-217
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