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2VVQ
Biol. Unit 3
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Asym.Unit (137 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (55 KB)
Biol.Unit 3 (54 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE-5-PHOSPHATE ISOMERASE B IN COMPLEX WITH THE INHIBITOR 5-DEOXY-5-PHOSPHO-D-RIBONATE
Authors
:
E. Kowalinski, A. K. Roos, S. Mariano, L. Salmon, S. L. Mowbray
Date
:
10 Jun 08 (Deposition) - 01 Jul 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E (2x)
Keywords
:
Pentose Phosphate Pathway, Rpib, Rv2465C, Isomerase, Carbohydrate Metabolism
(Keyword Search:
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Reference
:
A. K. Roos, S. Mariano, E. Kowalinski, L. Salmon, S. L. Mowbray
D-Ribose-5-Phosphate Isomerase B From Escherichia Coli Is Also A Functional D-Allose-6-Phosphate Isomerase, While The Mycobacterium Tuberculosis Enzyme Is Not.
J. Mol. Biol. V. 382 667 2008
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 5-O-PHOSPHONO-D-RIBONIC ACID (R10a)
1b: 5-O-PHOSPHONO-D-RIBONIC ACID (R10b)
1c: 5-O-PHOSPHONO-D-RIBONIC ACID (R10c)
1d: 5-O-PHOSPHONO-D-RIBONIC ACID (R10d)
1e: 5-O-PHOSPHONO-D-RIBONIC ACID (R10e)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
R10
2
Ligand/Ion
5-O-PHOSPHONO-D-RIBONIC ACID
2
SO4
-1
Ligand/Ion
SULFATE ION
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Sites
(1, 1)
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All Sites
1: AC7 (SOFTWARE)
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Name
Evidence
Residues
Description
1
AC7
SOFTWARE
ASP E:11 , HIS E:12 , TYR E:46 , GLY E:69 , GLY E:70 , SER E:71 , GLY E:72 , ASN E:73 , GLY E:74 , GLU E:75 , HIS E:102 , ASN E:103 , ARG E:113 , ARG E:137 , ARG E:141 , HOH E:2019 , HOH E:2070 , HOH E:2084 , HOH E:2085
BINDING SITE FOR RESIDUE R10 E 200
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d2vvqa_ (A:)
1b: SCOP_d2vvqb_ (B:)
1c: SCOP_d2vvqc_ (C:)
1d: SCOP_d2vvqd_ (D:)
1e: SCOP_d2vvqe_ (E:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribose/Galactose isomerase RpiB/AlsB
(27)
Superfamily
:
Ribose/Galactose isomerase RpiB/AlsB
(27)
Family
:
Ribose/Galactose isomerase RpiB/AlsB
(12)
Protein domain
:
Alternate ribose 5-phosphate isomerase B, RpiB
(7)
Mycobacterium tuberculosis [TaxId: 1773]
(6)
1a
d2vvqa_
A:
1b
d2vvqb_
B:
1c
d2vvqc_
C:
1d
d2vvqd_
D:
1e
d2vvqe_
E:
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CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_2vvqC00 (C:3-161)
1b: CATH_2vvqD00 (D:2-159)
1c: CATH_2vvqA00 (A:3-159)
1d: CATH_2vvqB00 (B:3-159)
1e: CATH_2vvqE00 (E:3-159)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Ribose 5-phosphate Isomerase B; Chain: A,
(13)
Homologous Superfamily
:
[code=3.40.1400.10, no name defined]
(13)
Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv.
(6)
1a
2vvqC00
C:3-161
1b
2vvqD00
D:2-159
1c
2vvqA00
A:3-159
1d
2vvqB00
B:3-159
1e
2vvqE00
E:3-159
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_LacAB_rpiB_2vvqE01 (E:5-146)
1b: PFAM_LacAB_rpiB_2vvqE02 (E:5-146)
1c: PFAM_LacAB_rpiB_2vvqE03 (E:5-146)
1d: PFAM_LacAB_rpiB_2vvqE04 (E:5-146)
1e: PFAM_LacAB_rpiB_2vvqE05 (E:5-146)
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Clan
:
no clan defined [family: LacAB_rpiB]
(12)
Family
:
LacAB_rpiB
(12)
Mycobacterium tuberculosis
(3)
1a
LacAB_rpiB-2vvqE01
E:5-146
1b
LacAB_rpiB-2vvqE02
E:5-146
1c
LacAB_rpiB-2vvqE03
E:5-146
1d
LacAB_rpiB-2vvqE04
E:5-146
1e
LacAB_rpiB-2vvqE05
E:5-146
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Show PDB file:
Asym.Unit (137 KB)
Header - Asym.Unit
Biol.Unit 1 (55 KB)
Header - Biol.Unit 1
Biol.Unit 2 (55 KB)
Header - Biol.Unit 2
Biol.Unit 3 (54 KB)
Header - Biol.Unit 3
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