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2VVI
Asym. Unit
Info
Asym.Unit (173 KB)
Biol.Unit 1 (167 KB)
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(1)
Title
:
IRISFP FLUORESCENT PROTEIN IN ITS GREEN FORM, TRANS CONFORMATION
Authors
:
V. Adam, M. Lelimousin, S. Boehme, G. Desfonds, K. Nienhaus, M. J. Field, J. Wiedenmann, S. Mcsweeney, G. U. Nienhaus, D. Bourgeois
Date
:
09 Jun 08 (Deposition) - 11 Nov 08 (Release) - 09 Dec 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Photoactivation, Photoconversion, Fluorescent Protein, Optical Highlighters, Microspectrophotometry, Eosfp, Photochromism, Photoswitching
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Adam, M. Lelimousin, S. Boehme, G. Desfonds, K. Nienhaus, M. J. Field, J. Wiedenmann, S. Mcsweeney, G. U. Nienhaus, D. Bourgeois
Structural Characterization Of Irisfp, An Optical Highlighter Undergoing Multiple Photo-Induced Transformations.
Proc. Natl. Acad. Sci. Usa V. 105 18343 2008
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: 2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETH... (CR8a)
1b: 2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETH... (CR8b)
1c: 2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETH... (CR8c)
1d: 2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETH... (CR8d)
2a: SULFITE ION (SO3a)
2b: SULFITE ION (SO3b)
2c: SULFITE ION (SO3c)
2d: SULFITE ION (SO3d)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CR8
4
Mod. Amino Acid
2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETHYL]-1-(CARBOXYMETHYL)-4-[(4-OXOCYCLOHEXA-2,5-DIEN-1-YLIDENE)METHYL]-1H-IMIDAZOL-5-OLATE
2
SO3
4
Ligand/Ion
SULFITE ION
3
SO4
16
Ligand/Ion
SULFATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:17 , HIS A:22 , HIS A:121 , HOH A:2291 , HOH A:2292 , ARG C:104 , ARG C:119
BINDING SITE FOR RESIDUE SO4 A1222
02
AC2
SOFTWARE
ASP B:150 , HOH B:2198 , HOH B:2199 , HOH B:2200
BINDING SITE FOR RESIDUE SO4 B1224
03
AC3
SOFTWARE
ASP A:202 , LYS A:203 , HOH A:2277
BINDING SITE FOR RESIDUE SO4 A1223
04
AC4
SOFTWARE
LYS A:182 , GLY A:183
BINDING SITE FOR RESIDUE SO4 A1224
05
AC5
SOFTWARE
CYS A:195 , ILE A:196 , GLU A:197 , TYR A:211 , HIS A:213
BINDING SITE FOR RESIDUE SO3 A1225
06
AC6
SOFTWARE
HIS A:74 , HIS A:217 , SER A:218 , HOH A:2293 , HOH A:2294
BINDING SITE FOR RESIDUE SO4 A1226
07
AC7
SOFTWARE
ASN B:17 , HIS B:22 , HOH B:2201 , HOH B:2202 , HOH B:2203
BINDING SITE FOR RESIDUE SO4 B1225
08
AC8
SOFTWARE
ASP A:150 , HOH A:2212 , HOH A:2296 , HOH A:2297 , ALA B:167
BINDING SITE FOR RESIDUE SO4 A1227
09
AC9
SOFTWARE
ASP B:202 , LYS B:203 , HOH B:2181
BINDING SITE FOR RESIDUE SO4 B1226
10
BC1
SOFTWARE
LYS B:182 , GLY B:183 , HOH B:2204
BINDING SITE FOR RESIDUE SO4 B1227
11
BC2
SOFTWARE
PRO A:221 , CYS B:195 , GLU B:197 , TYR B:211 , HOH B:2205
BINDING SITE FOR RESIDUE SO3 B1228
12
BC3
SOFTWARE
ARG A:119 , ASN C:17 , HIS C:22 , HIS C:121 , HOH C:2257 , HOH C:2258
BINDING SITE FOR RESIDUE SO4 C1224
13
BC4
SOFTWARE
ALA C:167 , VAL D:148 , ARG D:149 , ASP D:150 , HOH D:2234 , HOH D:2235
BINDING SITE FOR RESIDUE SO4 D1223
14
BC5
SOFTWARE
ASP C:202 , LYS C:203
BINDING SITE FOR RESIDUE SO4 C1225
15
BC6
SOFTWARE
PHE A:34 , GLU A:70 , HOH A:2063 , HOH A:2128 , TYR C:78 , GLY C:151 , LEU C:186 , HOH C:2260 , HOH C:2261 , HOH C:2262 , HOH C:2263
BINDING SITE FOR RESIDUE SO4 C1226
16
BC7
SOFTWARE
CYS C:195 , ILE C:196 , GLU C:197 , TYR C:211 , GLU C:212 , HIS C:213 , HOH C:2264
BINDING SITE FOR RESIDUE SO3 C1227
17
BC8
SOFTWARE
ARG B:119 , HOH B:2101 , ASN D:17 , HIS D:22 , HIS D:121 , HOH D:2237
BINDING SITE FOR RESIDUE SO4 D1224
18
BC9
SOFTWARE
ASP D:202 , LYS D:203
BINDING SITE FOR RESIDUE SO4 D1225
19
CC1
SOFTWARE
LYS D:182 , GLY D:183 , HOH D:2238
BINDING SITE FOR RESIDUE SO4 D1226
20
CC2
SOFTWARE
CYS D:195 , ILE D:196 , GLU D:197 , TYR D:211 , HIS D:213 , HOH D:2240
BINDING SITE FOR RESIDUE SO3 D1227
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2vvia_ (A:)
1b: SCOP_d2vvib_ (B:)
1c: SCOP_d2vvic_ (C:)
1d: SCOP_d2vvid_ (D:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GFP-like
(339)
Superfamily
:
GFP-like
(339)
Family
:
automated matches
(66)
Protein domain
:
automated matches
(66)
Lobophyllia hemprichii [TaxId: 46758]
(12)
1a
d2vvia_
A:
1b
d2vvib_
B:
1c
d2vvic_
C:
1d
d2vvid_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Protein & NOT Variant
Protein & NOT Site
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Chain A
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Chain C
Chain D
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (173 KB)
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