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Getting 'Biological Unit' information from database.
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2VVC
Biol. Unit 5
Info
Asym.Unit (112 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (52 KB)
Biol.Unit 3 (46 KB)
Biol.Unit 4 (12 KB)
Biol.Unit 5 (43 KB)
Biol.Unit 6 (12 KB)
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(1)
Title
:
AMINOPYRROLIDINE FACTOR XA INHIBITOR
Authors
:
K. Groebke-Zbinden, D. W. Banner, J. M. Benz, F. Blasco, G. Decoret, J. H B. Kuhn, N. Panday, F. Ricklin, P. Risch, D. Schlatter, M. Stahl, R. Ung
Date
:
05 Jun 08 (Deposition) - 07 Jul 09 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,K,L
Biol. Unit 1: A,L (1x)
Biol. Unit 2: B,K (1x)
Biol. Unit 3: A (1x)
Biol. Unit 4: L (1x)
Biol. Unit 5: B (1x)
Biol. Unit 6: K (1x)
Keywords
:
Hydrolase, Zymogen, Protease, Glycoprotein, Gamma-Carboxyglutamic Acid, Blood Clotting, Coagulation Factor, Hydroxylation, Serine Protease, Egf-Like Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. G. Zbinden, L. Anselm, D. W. Banner, J. M. Benz, F. Blasco, G. Decoret J. Himber, B. Kuhn, N. Panday, F. Ricklin, P. Risch, D. Schlatter, M. Stahl, S. Thomi, R. Unger, W. Haap
Design Of Novel Aminopyrrolidine Factor Xa Inhibitors From Screening Hit.
Eur. J. Med. Chem. V. 44 2787 2009
[
close entry info
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: 5-CHLORO-N-[(3S,4S)-1-(2-{[2-FLUOR... (LZFa)
2b: 5-CHLORO-N-[(3S,4S)-1-(2-{[2-FLUOR... (LZFb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
LZF
1
Ligand/Ion
5-CHLORO-N-[(3S,4S)-1-(2-{[2-FLUORO-4-(2-OXOPYRIDIN-1(2H)-YL)PHENYL]AMINO}-2-OXOETHYL)-4-METHOXYPYRROLIDIN-3-YL]THIOPHENE-2-CARBOXAMIDE
3
NA
-1
Ligand/Ion
SODIUM ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
GLU B:97 , THR B:98 , GLU B:147 , PHE B:174 , ASP B:189 , ALA B:190 , GLN B:192 , SER B:195 , VAL B:213 , TRP B:215 , GLY B:216 , GLU B:217 , GLY B:218 , CYS B:220 , GLY B:226 , ILE B:227 , TYR B:228 , HOH B:2178 , HOH B:2188 , HOH B:2209
BINDING SITE FOR RESIDUE LZF B 1244
2
AC5
SOFTWARE
TYR B:185 , ASP B:185A , ARG B:222 , LYS B:224 , HOH B:2171 , HOH B:2176
BINDING SITE FOR RESIDUE NA B 1245
[
close Site info
]
SAPs(SNPs)/Variants
(18, 18)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_065437 (G69R, chain B, )
02: VAR_065438 (E84K, chain B, )
03: VAR_065439 (D102N, chain B, )
04: VAR_065440 (R107W, chain B, )
05: VAR_065441 (V118M, chain B, )
06: VAR_065442 (E129K, chain B, )
07: VAR_065443 (T135M, chain B, )
08: VAR_065444 (G140S, chain B, )
09: VAR_065445 (R143C, chain B, )
10: VAR_065446 (S152P, chain B, )
11: VAR_072751 (V160A, chain B, )
12: VAR_065447 (P161S, chain B, )
13: VAR_065448 (C168F, chain B, )
14: VAR_065449 (C182R, chain B, )
15: VAR_065450 (G184S, chain B, )
16: VAR_065451 (G196R, chain B, )
17: VAR_072752 (G197D, chain B, )
18: VAR_065452 (K224N, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_065437
G
289
R
FA10_HUMAN
Disease (FA10D)
---
B
G
69
R
02
UniProt
VAR_065438
E
304
K
FA10_HUMAN
Disease (FA10D)
---
B
E
84
K
04
UniProt
VAR_065439
D
322
N
FA10_HUMAN
Disease (FA10D)
---
B
D
102
N
05
UniProt
VAR_065440
R
327
W
FA10_HUMAN
Disease (FA10D)
---
B
R
107
W
09
UniProt
VAR_065441
V
338
M
FA10_HUMAN
Disease (FA10D)
---
B
V
118
M
10
UniProt
VAR_065442
E
350
K
FA10_HUMAN
Disease (FA10D)
---
B
E
129
K
11
UniProt
VAR_065443
T
358
M
FA10_HUMAN
Disease (FA10D)
---
B
T
135
M
12
UniProt
VAR_065444
G
363
S
FA10_HUMAN
Disease (FA10D)
---
B
G
140
S
13
UniProt
VAR_065445
R
366
C
FA10_HUMAN
Disease (FA10D)
---
B
R
143
C
14
UniProt
VAR_065446
S
374
P
FA10_HUMAN
Disease (FA10D)
---
B
S
152
P
15
UniProt
VAR_072751
V
382
A
FA10_HUMAN
Disease (FA10D)
---
B
V
160
A
16
UniProt
VAR_065447
P
383
S
FA10_HUMAN
Disease (FA10D)
---
B
P
161
S
17
UniProt
VAR_065448
C
390
F
FA10_HUMAN
Disease (FA10D)
199778916
B
C
168
F
18
UniProt
VAR_065449
C
404
R
FA10_HUMAN
Disease (FA10D)
---
B
C
182
R
19
UniProt
VAR_065450
G
406
S
FA10_HUMAN
Disease (FA10D)
---
B
G
184
S
20
UniProt
VAR_065451
G
420
R
FA10_HUMAN
Disease (FA10D)
---
B
G
196
R
21
UniProt
VAR_072752
G
421
D
FA10_HUMAN
Disease (FA10D)
---
B
G
197
D
22
UniProt
VAR_065452
K
448
N
FA10_HUMAN
Disease (FA10D)
---
B
K
224
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
2: TRYPSIN_DOM (B:16-243)
3: TRYPSIN_HIS (B:53-58)
4: TRYPSIN_SER (B:189-200)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_2
PS01186
EGF-like domain signature 2.
FA10_HUMAN
110-121
149-164
0
-
-
-
2
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
FA10_HUMAN
235-467
1
-
B:16-243
3
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
FA10_HUMAN
272-277
1
-
B:53-58
4
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
FA10_HUMAN
413-424
1
-
B:189-200
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2vvca_ (A:)
1b: SCOP_d2vvcb_ (B:)
2a: SCOP_d2vvck_ (K:)
2b: SCOP_d2vvcl_ (L:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
automated matches
(162)
Human (Homo sapiens) [TaxId: 9606]
(132)
1a
d2vvca_
A:
1b
d2vvcb_
B:
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
automated matches
(66)
Human (Homo sapiens) [TaxId: 9606]
(66)
2a
d2vvck_
K:
2b
d2vvcl_
L:
[
close SCOP info
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2vvcA01 (A:16-27,A:121-232)
1b: CATH_2vvcA02 (A:28-120,A:233-243)
1c: CATH_2vvcB02 (B:28-120,B:233-243)
1d: CATH_2vvcB01 (B:16-27,B:121-232)
2a: CATH_2vvcL00 (L:87-138)
2b: CATH_2vvcK00 (K:86-139)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
2vvcA01
A:16-27,A:121-232
1b
2vvcA02
A:28-120,A:233-243
1c
2vvcB02
B:28-120,B:233-243
1d
2vvcB01
B:16-27,B:121-232
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Human (Homo sapiens)
(195)
2a
2vvcL00
L:87-138
2b
2vvcK00
K:86-139
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Trypsin_2vvcB01 (B:16-238)
1b: PFAM_Trypsin_2vvcB02 (B:16-238)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Homo sapiens (Human)
(339)
1a
Trypsin-2vvcB01
B:16-238
1b
Trypsin-2vvcB02
B:16-238
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Protein & NOT Variant
Protein & NOT Site
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Chain B
Asymmetric Unit 1
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