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2VV8
Asym. Unit
Info
Asym.Unit (93 KB)
Biol.Unit 1 (85 KB)
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(1)
Title
:
CO-BOUND STRUCTURE OF BJFIXLH
Authors
:
R. A. Ayers, K. Moffat
Date
:
04 Jun 08 (Deposition) - 04 Nov 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.61
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Signaling Protein, Transferase, Phosphoprotein, Nitrogen Fixation, Per-Arnt-Sim, Pas, Kinase, Two-Component Regulatory System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. A. Ayers, K. Moffat
Changes In Quaternary Structure In The Signaling Mechanisms Of Pas Domains.
Biochemistry V. 47 12078 2008
[
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]
Hetero Components
(4, 11)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: CARBON MONOXIDE (CMOa)
2b: CARBON MONOXIDE (CMOb)
2c: CARBON MONOXIDE (CMOc)
2d: CARBON MONOXIDE (CMOd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
CMO
4
Ligand/Ion
CARBON MONOXIDE
3
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NA
1
Ligand/Ion
SODIUM ION
[
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]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:157 , ILE A:159 , VAL A:188 , LEU A:191 , MET A:192 , ASP A:196 , HIS A:200 , TYR A:203 , ARG A:206 , TYR A:207 , HIS A:214 , ILE A:215 , ILE A:216 , ARG A:220 , VAL A:222 , THR A:223 , LEU A:236 , ILE A:238 , PHE A:249 , GLY A:251 , CMO A:1259 , HOH A:2066
BINDING SITE FOR RESIDUE HEM A1258
02
AC2
SOFTWARE
ILE B:157 , ILE B:159 , LEU B:191 , MET B:192 , ASP B:196 , HIS B:200 , TYR B:203 , ARG B:206 , TYR B:207 , PRO B:213 , HIS B:214 , ILE B:215 , ILE B:216 , ARG B:220 , VAL B:222 , THR B:223 , MET B:234 , LEU B:236 , ILE B:238 , PHE B:249 , CMO B:1260 , HOH B:2120
BINDING SITE FOR RESIDUE HEM B1259
03
AC3
SOFTWARE
ILE C:157 , ILE C:159 , VAL C:188 , LEU C:191 , MET C:192 , ASP C:196 , HIS C:200 , TYR C:203 , ILE C:204 , TYR C:207 , HIS C:214 , ILE C:215 , ILE C:216 , ARG C:220 , VAL C:222 , THR C:223 , MET C:234 , LEU C:236 , ILE C:238 , PHE C:249 , GLY C:251 , CMO C:1260 , HOH C:2123 , HOH C:2124 , HOH C:2125
BINDING SITE FOR RESIDUE HEM C1259
04
AC4
SOFTWARE
HOH B:2022 , ILE D:157 , ILE D:159 , VAL D:188 , LEU D:191 , MET D:192 , ASP D:196 , HIS D:200 , TYR D:203 , TYR D:207 , PRO D:213 , HIS D:214 , ILE D:215 , ILE D:216 , ARG D:220 , VAL D:222 , THR D:223 , MET D:234 , LEU D:236 , ILE D:238 , PHE D:249 , GLY D:251 , CMO D:1260
BINDING SITE FOR RESIDUE HEM D1259
05
AC5
SOFTWARE
ILE A:215 , LEU A:236 , ILE A:238 , HEM A:1258
BINDING SITE FOR RESIDUE CMO A1259
06
AC6
SOFTWARE
ILE B:215 , LEU B:236 , ILE B:238 , HEM B:1259
BINDING SITE FOR RESIDUE CMO B1260
07
AC7
SOFTWARE
ILE C:215 , LEU C:236 , ILE C:238 , HEM C:1259
BINDING SITE FOR RESIDUE CMO C1260
08
AC8
SOFTWARE
ILE D:215 , LEU D:236 , ILE D:238 , HEM D:1259
BINDING SITE FOR RESIDUE CMO D1260
09
AC9
SOFTWARE
LEU A:181 , GLU A:182 , ILE A:184 , HOH A:2037 , LEU C:181 , GLU C:182 , ILE C:184 , HOH C:2029
BINDING SITE FOR RESIDUE NA C1261
10
BC1
SOFTWARE
SER C:237 , HOH C:2077 , SER D:243 , GLY D:244
BINDING SITE FOR RESIDUE CL C1262
11
BC2
SOFTWARE
ARG A:220 , ILE A:221 , ARG C:254 , HOH C:2077 , HOH C:2105 , GLY D:244
BINDING SITE FOR RESIDUE CL C1263
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PAC (-|A:209-257,B:209-258,C:209-258,D:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PAC
PS50113
PAC domain profile.
FIXL_BRADU
88-140
209-268
4
-
A:209-257
B:209-258
C:209-258
D:209-258
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2vv8a_ (A:)
1b: SCOP_d2vv8b_ (B:)
1c: SCOP_d2vv8c_ (C:)
1d: SCOP_d2vv8d_ (D:)
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Classes
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(
)
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(
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(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Profilin-like
(304)
Superfamily
:
PYP-like sensor domain (PAS domain)
(163)
Family
:
Heme-binding PAS domain
(26)
Protein domain
:
Histidine kinase FixL heme domain
(20)
Bradyrhizobium japonicum [TaxId: 375]
(18)
1a
d2vv8a_
A:
1b
d2vv8b_
B:
1c
d2vv8c_
C:
1d
d2vv8d_
D:
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2vv8D00 (D:151-258)
1b: CATH_2vv8B00 (B:152-258)
1c: CATH_2vv8A00 (A:152-257)
1d: CATH_2vv8C00 (C:153-258)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta-Lactamase
(202)
Homologous Superfamily
:
[code=3.30.450.20, no name defined]
(117)
Bradyrhizobium japonicum. Organism_taxid: 375.
(7)
1a
2vv8D00
D:151-258
1b
2vv8B00
B:152-258
1c
2vv8A00
A:152-257
1d
2vv8C00
C:153-258
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain C
Chain D
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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