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2VV2
Biol. Unit 1
Info
Asym.Unit (92 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (45 KB)
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(1)
Title
:
HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 5-HEPA
Authors
:
T. Itoh, L. Fairall, J. W. R. Schwabe
Date
:
02 Jun 08 (Deposition) - 19 Aug 08 (Release) - 06 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transcription Regulation, Alternative Splicing, Ligand Binding Domain, Nuclear Receptor, Diabetes Mellitus, Zinc-Finger, Dna-Binding, Polymorphism, Transcription, Zinc, Obesity, Nucleus, Receptor, Activator, Oxidised Fatty Acid, Transcription Factor, Metal-Binding, Phosphoprotein, Disease Mutation
(Keyword Search:
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Reference
:
T. Itoh, L. Fairall, K. Amin, Y. Inaba, A. Szanto, B. L. Balint, L. Nagy, K. Yamamoto, J. W. R. Schwabe
Structural Basis For The Activation Of Pparg By Oxidised Fatty Acids
Nat. Struct. Mol. Biol. V. 15 924 2008
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (5R,6E,8Z,11Z,14Z,17Z)-5-HYDROXYIC... (5HEa)
1b: (5R,6E,8Z,11Z,14Z,17Z)-5-HYDROXYIC... (5HEb)
1c: (5R,6E,8Z,11Z,14Z,17Z)-5-HYDROXYIC... (5HEc)
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Label:
No.
Name
Count
Type
Full Name
1
5HE
1
Ligand/Ion
(5R,6E,8Z,11Z,14Z,17Z)-5-HYDROXYICOSA-6,8,11,14,17-PENTAENOIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:281 , CYS A:285 , SER A:289 , HIS A:323 , TYR A:327 , LEU A:330 , SER A:342 , PHE A:363 , MET A:364 , HIS A:449 , LEU A:453 , TYR A:473
BINDING SITE FOR RESIDUE 5HE A1476
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_010725 (Q286P, chain A, )
2: VAR_010726 (R288H, chain A, )
3: VAR_010727 (V290M, chain A, )
4: VAR_022700 (F360L, chain A, )
5: VAR_022701 (R397C, chain A, )
6: VAR_010728 (P467L, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_010725
Q
314
P
PPARG_HUMAN
Unclassified
28936407
A
Q
286
P
2
UniProt
VAR_010726
R
316
H
PPARG_HUMAN
Unclassified
28936407
A
R
288
H
3
UniProt
VAR_010727
V
318
M
PPARG_HUMAN
Unclassified
---
A
V
290
M
4
UniProt
VAR_022700
F
388
L
PPARG_HUMAN
Disease (FPLD3)
---
A
F
360
L
5
UniProt
VAR_022701
R
425
C
PPARG_HUMAN
Disease (FPLD3)
---
A
R
397
C
6
UniProt
VAR_010728
P
495
L
PPARG_HUMAN
Unclassified
---
A
P
467
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2vv2a_ (A:)
1b: SCOP_d2vv2b_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
automated matches
(140)
Human (Homo sapiens) [TaxId: 9606]
(122)
1a
d2vv2a_
A:
1b
d2vv2b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2vv2A00 (A:207-474)
1b: CATH_2vv2B00 (B:207-474)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
2vv2A00
A:207-474
1b
2vv2B00
B:207-474
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Hormone_recep_2vv2B01 (B:266-461)
1b: PFAM_Hormone_recep_2vv2B02 (B:266-461)
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Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-2vv2B01
B:266-461
1b
Hormone_recep-2vv2B02
B:266-461
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Chain A
Asymmetric Unit 1
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Asym.Unit (92 KB)
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