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2VUX
Asym. Unit
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Asym.Unit (93 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
HUMAN RIBONUCLEOTIDE REDUCTASE, SUBUNIT M2 B
Authors
:
M. Welin, M. Moche, J. Andersson, C. H. Arrowsmith, H. Berglund, R. D. Bu R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Gras M. Hammarstrom, M. D. Herman, A. Johansson, I. Johansson, A. Kallas, T. Karlberg, T. Kotenyova, L. Lehtio, M. E. Nilsson, T. Nyman, C. Perss J. Sagemark, H. Schueler, L. Svensson, A. G. Thorsell, L. Tresaugues, S. Van Den Berg, J. Weigelt, M. Wikstrom, P. Nordlund, Structural G Consortium (Sgc)
Date
:
31 May 08 (Deposition) - 15 Jul 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Dna Replication, De Novo Pathway, Nucleotide Metabolism, Ribonucleotide Reductase, Rnr, Iron, P53R2, Casp8, Nucleus, Metal-Binding, Oxidoreductase, Dna Damage, Dna Repair, Iron Binding, Subunit M2 B
(Keyword Search:
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Reference
:
M. Welin, M. Moche, C. H. Arrowsmith, H. Berglund, R. D. Busam, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, M. D. Herman, A. Johansson, I. Johansson A. Kallas, T. Karlberg, T. Kotenyova, L. Lehtio, M. E. Nilsson, T. Nyman, C. Persson, J. Sagemark, H. Schueler, L. Svensson, A. G. Thorsell, L. Tresaugues, S. Van Den Berg, J. Weigelt, M. Wikstrom, P. Nordlund
Human Ribonucleotide Reductase, Subunit M2 B
To Be Published
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
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Label:
No.
Name
Count
Type
Full Name
1
FE
2
Ligand/Ion
FE (III) ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:131 , GLU A:194 , GLU A:228 , HIS A:231
BINDING SITE FOR RESIDUE FE A1313
2
AC2
SOFTWARE
GLU B:131 , GLU B:194 , GLU B:228 , HIS B:231
BINDING SITE FOR RESIDUE FE B1315
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SAPs(SNPs)/Variants
(9, 18)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_046217 (W64R, chain A/B, )
2: VAR_065122 (R110H, chain A/B, )
3: VAR_025699 (V115L, chain A/B, )
4: VAR_065123 (R121H, chain A/B, )
5: VAR_046219 (E194G, chain A/B, )
6: VAR_046220 (E194K, chain A/B, )
7: VAR_046221 (I224S, chain A/B, )
8: VAR_046222 (C236F, chain A/B, )
9: VAR_046223 (M282I, chain A/B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_046217
W
64
R
RIR2B_HUMAN
Disease (MTDPS8A)
---
A/B
W
64
R
2
UniProt
VAR_065122
R
110
H
RIR2B_HUMAN
Disease (MTDPS8B)
---
A/B
R
110
H
3
UniProt
VAR_025699
V
115
L
RIR2B_HUMAN
Unclassified
---
A/B
V
115
L
4
UniProt
VAR_065123
R
121
H
RIR2B_HUMAN
Disease (MTDPS8B)
---
A/B
R
121
H
5
UniProt
VAR_046219
E
194
G
RIR2B_HUMAN
Disease (MTDPS8A)
---
A/B
E
194
G
6
UniProt
VAR_046220
E
194
K
RIR2B_HUMAN
Disease (MTDPS8A)
---
A/B
E
194
K
7
UniProt
VAR_046221
I
224
S
RIR2B_HUMAN
Disease (MTDPS8A)
---
A/B
I
224
S
8
UniProt
VAR_046222
C
236
F
RIR2B_HUMAN
Disease (MTDPS8A)
---
A/B
C
236
F
9
UniProt
VAR_046223
M
282
I
RIR2B_HUMAN
Disease (MTDPS8A)
182614164
A/B
M
282
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RIBORED_SMALL (A:130-146,B:130-146)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBORED_SMALL
PS00368
Ribonucleotide reductase small subunit signature.
RIR2B_HUMAN
130-146
2
A:130-146
B:130-146
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2vuxa_ (A:)
1b: SCOP_d2vuxb_ (B:)
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)
Protein Domains
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(
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Organisms
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)
(
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2vuxa_
A:
1b
d2vuxb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ribonuc_red_sm_2vuxB01 (B:32-313)
1b: PFAM_Ribonuc_red_sm_2vuxB02 (B:32-313)
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Clan
:
Ferritin
(185)
Family
:
Ribonuc_red_sm
(41)
Homo sapiens (Human)
(2)
1a
Ribonuc_red_sm-2vuxB01
B:32-313
1b
Ribonuc_red_sm-2vuxB02
B:32-313
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Asymmetric Unit 1
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