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2VU9
Asym. Unit
Info
Asym.Unit (89 KB)
Biol.Unit 1 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN SEROTYPE A BINDING DOMAIN IN COMPLEX WITH GT1B
Authors
:
P. Stenmark, J. Dupuy, R. C. Stevens
Date
:
22 May 08 (Deposition) - 26 Aug 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Metalloprotease, Neurotoxin, Ganglioside, Metal-Binding, Toxin, Protease, Membrane, Receptor, Secreted
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
P. Stenmark, J. Dupuy, A. Imamura, M. Kiso, R. C. Stevens
Crystal Structure Of Botulinum Neurotoxin Type A In Complex With The Cell Surface Co-Receptor Gt1B- Insight Into The Toxin-Neuron Interaction.
Plos Pathog. V. 4 E129 2008
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Hetero Components
(5, 7)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
3a: MAGNESIUM ION (MGa)
4a: N-ACETYL-D-GALACTOSAMINE (NGAa)
5a: O-SIALIC ACID (SIAa)
5b: O-SIALIC ACID (SIAb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
NGA
1
Ligand/Ion
N-ACETYL-D-GALACTOSAMINE
5
SIA
2
Ligand/Ion
O-SIALIC ACID
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:1089 , ASN A:1093 , HOH A:3177 , HOH A:3318 , HOH A:3319 , HOH A:3321
BINDING SITE FOR RESIDUE MG A2298
2
AC2
SOFTWARE
GAL A:2300 , SIA A:2302
BINDING SITE FOR RESIDUE BGC A2299
3
AC3
SOFTWARE
BGC A:2299 , SIA A:2302 , NGA A:2304 , HOH A:3397
BINDING SITE FOR RESIDUE GAL A2300
4
AC4
SOFTWARE
GLU A:1203 , PHE A:1252 , HIS A:1253 , SER A:1264 , TRP A:1266 , TYR A:1267 , SIA A:2303 , NGA A:2304 , HOH A:3350 , HOH A:3394
BINDING SITE FOR RESIDUE GAL A2301
5
AC5
SOFTWARE
GLU A:969 , ASN A:970 , TRP A:1266 , ARG A:1276 , BGC A:2299 , GAL A:2300 , NGA A:2304 , HOH A:3396 , HOH A:3397
BINDING SITE FOR RESIDUE SIA A2302
6
AC6
SOFTWARE
ILE A:927 , LEU A:928 , ASN A:1051 , ASN A:1052 , TYR A:1117 , PHE A:1252 , TYR A:1267 , SER A:1275 , ARG A:1276 , GAL A:2301 , HOH A:3373 , HOH A:3376
BINDING SITE FOR RESIDUE SIA A2303
7
AC7
SOFTWARE
VAL A:1202 , GLU A:1203 , HIS A:1253 , TRP A:1266 , GAL A:2300 , GAL A:2301 , SIA A:2302 , HOH A:3394 , HOH A:3395
BINDING SITE FOR RESIDUE NGA A2304
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2vu9a2 (A:1080-1297)
2a: SCOP_d2vu9a1 (A:873-1079)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
STI-like
(91)
Family
:
Clostridium neurotoxins, C-terminal domain
(35)
Protein domain
:
automated matches
(6)
Clostridium botulinum [TaxId: 36826]
(1)
1a
d2vu9a2
A:1080-1297
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Clostridium neurotoxins, the second last domain
(35)
Protein domain
:
automated matches
(6)
Clostridium botulinum [TaxId: 36826]
(1)
2a
d2vu9a1
A:873-1079
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2vu9A01 (A:873-1099)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Clostridium botulinum. Organism_taxid: 36826. Strain: a.
(1)
1a
2vu9A01
A:873-1099
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Toxin_R_bind_N_2vu9A01 (A:885-1079)
2a: PFAM_Toxin_R_bind_C_2vu9A02 (A:1088-1293)
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Clan
:
Concanavalin
(293)
Family
:
Toxin_R_bind_N
(27)
Clostridium botulinum
(26)
1a
Toxin_R_bind_N-2vu9A01
A:885-1079
Clan
:
Trefoil
(131)
Family
:
Toxin_R_bind_C
(27)
Clostridium botulinum
(26)
2a
Toxin_R_bind_C-2vu9A02
A:1088-1293
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Chain A
Asymmetric Unit 1
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