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2VU1
Asym. Unit
Info
Asym.Unit (261 KB)
Biol.Unit 1 (253 KB)
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(1)
Title
:
BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF WITH O-PANTHETEINE-11-PIVALATE.
Authors
:
P. Kursula, W. Schmitz, R. K. Wierenga
Date
:
19 May 08 (Deposition) - 28 Oct 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.51
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Acyltransferase, Phb Biosynthesis, Transferase, Thiolase Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
G. Merilainen, W. Schmitz, R. K. Wierenga, P. Kursula
The Sulfur Atoms Of The Substrate Coa And The Catalytic Cysteine Are Required For A Productive Mode Of Substrate Binding In Bacterial Biosynthetic Thiolase, A Thioester-Dependent Enzyme.
Febs J. V. 275 6136 2008
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: S-HYDROXYCYSTEINE (CSOa)
1b: S-HYDROXYCYSTEINE (CSOb)
1c: S-HYDROXYCYSTEINE (CSOc)
1d: S-HYDROXYCYSTEINE (CSOd)
2a: SODIUM ION (NAa)
3a: PANTOTHENYL-AMINOETHANOL-11-PIVALI... (OPIa)
3b: PANTOTHENYL-AMINOETHANOL-11-PIVALI... (OPIb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSO
4
Mod. Amino Acid
S-HYDROXYCYSTEINE
2
NA
1
Ligand/Ion
SODIUM ION
3
OPI
2
Ligand/Ion
PANTOTHENYL-AMINOETHANOL-11-PIVALIC ACID
4
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:156 , PHE A:235 , SER A:247 , ALA A:318 , HIS A:348 , HOH A:2405 , MET D:134
BINDING SITE FOR RESIDUE OPI A1393
02
AC2
SOFTWARE
GLU A:29 , HOH A:2042
BINDING SITE FOR RESIDUE NA A1394
03
AC3
SOFTWARE
SER A:260 , ALA A:262 , ARG A:266
BINDING SITE FOR RESIDUE SO4 A1395
04
AC4
SOFTWARE
LYS A:298 , ARG A:302 , HOH A:2339 , HOH A:2408 , GLY B:106
BINDING SITE FOR RESIDUE SO4 A1396
05
AC5
SOFTWARE
PHE B:235 , ALA B:243 , SER B:247 , GLY B:248 , LEU B:249 , ALA B:318 , PHE B:319 , HIS B:348 , HOH B:2282 , HOH B:2389 , HOH B:2390 , MET C:134
BINDING SITE FOR RESIDUE OPI B1393
06
AC6
SOFTWARE
LYS B:298 , ARG B:302 , HOH B:2391 , HOH B:2392
BINDING SITE FOR RESIDUE SO4 B1394
07
AC7
SOFTWARE
SER B:260 , ALA B:262 , ARG B:266 , HOH B:2292 , HOH B:2396 , HOH B:2397 , HOH B:2398
BINDING SITE FOR RESIDUE SO4 B1395
08
AC8
SOFTWARE
ARG D:194 , GLU D:364 , ARG D:367
BINDING SITE FOR RESIDUE SO4 D1393
09
AC9
SOFTWARE
LYS B:298 , ARG B:302 , HOH B:2391 , HOH B:2392
BINDING SITE FOR RESIDUE SO4 B1394
10
BC1
SOFTWARE
SER A:260 , ALA A:262 , ARG A:266
BINDING SITE FOR RESIDUE SO4 A1395
11
BC2
SOFTWARE
SER B:260 , ALA B:262 , ARG B:266 , HOH B:2292 , HOH B:2396 , HOH B:2397 , HOH B:2398
BINDING SITE FOR RESIDUE SO4 B1395
12
BC3
SOFTWARE
LYS A:298 , ARG A:302 , HOH A:2339 , HOH A:2408 , GLY B:106
BINDING SITE FOR RESIDUE SO4 A1396
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: THIOLASE_1 (A:85-103,B:85-103,C:85-103,D:85-10...)
2: THIOLASE_2 (A:338-354,B:338-354,C:338-354,D:33...)
3: THIOLASE_3 (A:373-386,B:373-386,C:373-386,D:37...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOLASE_1
PS00098
Thiolases acyl-enzyme intermediate signature.
THIL_ZOORA
85-103
4
A:85-103
B:85-103
C:85-103
D:85-103
2
THIOLASE_2
PS00737
Thiolases signature 2.
THIL_ZOORA
338-354
4
A:338-354
B:338-354
C:338-354
D:338-354
3
THIOLASE_3
PS00099
Thiolases active site.
THIL_ZOORA
373-386
4
A:373-386
B:373-386
C:373-386
D:373-386
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2vu1a1 (A:2-268)
1b: SCOP_d2vu1a2 (A:269-392)
1c: SCOP_d2vu1b1 (B:1-268)
1d: SCOP_d2vu1b2 (B:269-392)
1e: SCOP_d2vu1c1 (C:2-268)
1f: SCOP_d2vu1c2 (C:269-392)
1g: SCOP_d2vu1d1 (D:3-268)
1h: SCOP_d2vu1d2 (D:269-392)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Thiolase-related
(67)
Protein domain
:
Biosynthetic thiolase
(16)
Zoogloea ramigera [TaxId: 350]
(16)
1a
d2vu1a1
A:2-268
1b
d2vu1a2
A:269-392
1c
d2vu1b1
B:1-268
1d
d2vu1b2
B:269-392
1e
d2vu1c1
C:2-268
1f
d2vu1c2
C:269-392
1g
d2vu1d1
D:3-268
1h
d2vu1d2
D:269-392
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2vu1A01 (A:4-124,A:194-275)
1b: CATH_2vu1B01 (B:4-124,B:194-275)
1c: CATH_2vu1C01 (C:4-124,C:194-275)
1d: CATH_2vu1D01 (D:4-124,D:194-275)
1e: CATH_2vu1A02 (A:152-193,A:276-389)
1f: CATH_2vu1B02 (B:152-193,B:276-389)
1g: CATH_2vu1C02 (C:152-193,C:276-389)
1h: CATH_2vu1D02 (D:152-193,D:276-389)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Zoogloea ramigera. Organism_taxid: 350.
(19)
1a
2vu1A01
A:4-124,A:194-275
1b
2vu1B01
B:4-124,B:194-275
1c
2vu1C01
C:4-124,C:194-275
1d
2vu1D01
D:4-124,D:194-275
1e
2vu1A02
A:152-193,A:276-389
1f
2vu1B02
B:152-193,B:276-389
1g
2vu1C02
C:152-193,C:276-389
1h
2vu1D02
D:152-193,D:276-389
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Thiolase_C_2vu1D01 (D:269-391)
1b: PFAM_Thiolase_C_2vu1D02 (D:269-391)
1c: PFAM_Thiolase_C_2vu1D03 (D:269-391)
1d: PFAM_Thiolase_C_2vu1D04 (D:269-391)
2a: PFAM_Thiolase_N_2vu1D05 (D:3-262)
2b: PFAM_Thiolase_N_2vu1D06 (D:3-262)
2c: PFAM_Thiolase_N_2vu1D07 (D:3-262)
2d: PFAM_Thiolase_N_2vu1D08 (D:3-262)
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Clans
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Families
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Organisms
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(
)
Clan
:
Thiolase
(72)
Family
:
Thiolase_C
(23)
Zoogloea ramigera
(15)
1a
Thiolase_C-2vu1D01
D:269-391
1b
Thiolase_C-2vu1D02
D:269-391
1c
Thiolase_C-2vu1D03
D:269-391
1d
Thiolase_C-2vu1D04
D:269-391
Family
:
Thiolase_N
(23)
Zoogloea ramigera
(15)
2a
Thiolase_N-2vu1D05
D:3-262
2b
Thiolase_N-2vu1D06
D:3-262
2c
Thiolase_N-2vu1D07
D:3-262
2d
Thiolase_N-2vu1D08
D:3-262
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