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Biol. Unit 1
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Asym.Unit (56 KB)
Biol.Unit 1 (101 KB)
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(1)
Title
:
THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE 1 IN COMPLEX WITH ADP AND DEOXYTHYMIDINE
Authors
:
K. Wild, G. E. Schulz
Date
:
01 Apr 97 (Deposition) - 22 Oct 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Key Enzyme In Thymidine Salvage Pathway, Additional Thymidylate Kinase Activity, Target For Anti-Herpes Viral Drugs, Transferase
(Keyword Search:
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]
)
Reference
:
K. Wild, T. Bohner, G. Folkers, G. E. Schulz
The Structures Of Thymidine Kinase From Herpes Simplex Viru Type 1 In Complex With Substrates And A Substrate Analogue.
Protein Sci. V. 6 2097 1997
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: THYMIDINE (THMa)
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Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
THM
2
Ligand/Ion
THYMIDINE
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:59 , MET A:60 , GLY A:61 , LYS A:62 , THR A:63 , THR A:64 , ARG A:216 , ARG A:220 , ARG A:222 , GLN A:331 , HOH A:615
BINDING SITE FOR RESIDUE ADP A 400
2
AC2
SOFTWARE
GLU A:83 , ILE A:100 , TYR A:101 , GLN A:125 , ALA A:168 , ARG A:222 , GLU A:225 , HOH A:606 , HOH A:615 , HOH A:616
BINDING SITE FOR RESIDUE THM A 500
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_KITH_HHV11_005 (C251G, chain A, )
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No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_KITH_HHV11_005
*
C
251
G
KITH_HHV11
---
---
A
C
251
G
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
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SCOP Domains
(1, 1)
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1a: SCOP_d2vtka_ (A:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nucleotide and nucleoside kinases
(231)
Protein domain
:
Thymidine kinase
(34)
Herpes simplex virus type 1, different strains [TaxId: 10298]
(29)
1a
d2vtka_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_2vtkA00 (A:46-376)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Herpes simplex virus (type 1 / strain f). Organism_taxid: 10304. Strain: f.
(3)
1a
2vtkA00
A:46-376
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_Herpes_TK_2vtkA01 (A:56-330)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Herpes_TK
(18)
Human herpesvirus 1 (strain 17) (HHV-1) (Human herpes simplex virus 1)
(13)
1a
Herpes_TK-2vtkA01
A:56-330
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