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2VTF
Asym. Unit
Info
Asym.Unit (234 KB)
Biol.Unit 1 (117 KB)
Biol.Unit 2 (115 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF THE ENDO-BETA-N-ACETYLGLUCOSAMINIDASE FROM ARTHROBACTER PROTOPHORMIAE E173Q MUTANT REVEALS A TIM BARREL CATALYTIC DOMAIN AND TWO ANCILLARY DOMAINS
Authors
:
Z. Ling, R. J. Bingham, M. D. L. Suits, J. W. B. Moir, A. J. Fairbanks, E. J
Date
:
14 May 08 (Deposition) - 31 Mar 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.79
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Family 85, Glycosidase, Arthrobacter, Carbohydrate Binding, Acetylglucosaminidase
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. D. Suits, Z. Ling, R. J. Bingham, N. C. Bruce, G. J. Davies, A. J. Fairbanks, J. W. Moir, E. J. Taylor
The X-Ray Crystal Structure Of An Arthrobacter Protophormiae Endo-Beta-N-Acetylglucosaminidase Reveals A (Beta/Alpha)(8) Catalytic Domain, Two Ancillary Domains And Active Site Residues Key For Transglycosylation Activity.
J. Mol. Biol. V. 389 1 2009
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHY... (B3Pa)
1b: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHY... (B3Pb)
1c: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHY... (B3Pc)
1d: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHY... (B3Pd)
2a: TRIETHYLENE GLYCOL (PGEa)
2b: TRIETHYLENE GLYCOL (PGEb)
2c: TRIETHYLENE GLYCOL (PGEc)
2d: TRIETHYLENE GLYCOL (PGEd)
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No.
Name
Count
Type
Full Name
1
B3P
4
Ligand/Ion
2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2
PGE
4
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:37 , ARG A:115 , THR A:350 , SER A:353 , HOH A:2477 , HOH A:2740 , HOH A:2754 , HOH A:2755 , HOH A:2756 , HOH A:2757 , HOH A:2758 , HOH A:2759 , HOH A:2760 , HOH A:2761
BINDING SITE FOR RESIDUE B3P A1618
2
AC2
SOFTWARE
LEU A:135 , GLU A:139 , ASP A:178 , GLY A:180 , THR A:181 , HOH A:2233 , HOH A:2234 , HOH A:2237 , HOH A:2282 , HOH A:2283 , HOH A:2763 , HOH A:2764 , HOH A:2765 , HOH A:2766 , PHE B:12
BINDING SITE FOR RESIDUE B3P A1619
3
AC3
SOFTWARE
GLU B:139 , GLY B:180 , THR B:181 , HOH B:2199 , HOH B:2203
BINDING SITE FOR RESIDUE B3P B1620
4
AC4
SOFTWARE
GLU B:37 , ARG B:115 , THR B:350 , SER B:353 , HOH B:2421 , HOH B:2703 , HOH B:2727 , HOH B:2728 , HOH B:2729 , HOH B:2730 , HOH B:2731
BINDING SITE FOR RESIDUE B3P B1621
5
AC5
SOFTWARE
HIS B:54 , GLY B:199 , HIS B:201 , TYR B:266 , HOH B:2153 , HOH B:2732
BINDING SITE FOR RESIDUE PGE B1622
6
AC6
SOFTWARE
LYS B:373 , TYR B:563 , LYS B:568 , HIS B:596 , GLU B:598
BINDING SITE FOR RESIDUE PGE B1623
7
AC7
SOFTWARE
HIS A:54 , GLY A:199 , HIS A:201 , TYR A:266 , HOH A:2767
BINDING SITE FOR RESIDUE PGE A1620
8
AC8
SOFTWARE
TYR A:563 , LYS A:570 , GLU A:600
BINDING SITE FOR RESIDUE PGE A1621
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_85_2vtfB01 (B:60-370)
1b: PFAM_Glyco_hydro_85_2vtfB02 (B:60-370)
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Clan
:
no clan defined [family: Glyco_hydro_85]
(1)
Family
:
Glyco_hydro_85
(1)
Arthrobacter protophormiae
(1)
1a
Glyco_hydro_85-2vtfB01
B:60-370
1b
Glyco_hydro_85-2vtfB02
B:60-370
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Asym.Unit (234 KB)
Header - Asym.Unit
Biol.Unit 1 (117 KB)
Header - Biol.Unit 1
Biol.Unit 2 (115 KB)
Header - Biol.Unit 2
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