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Getting 'Biological Unit' information from database.
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2VT7
Asym. Unit
Info
Asym.Unit (201 KB)
Biol.Unit 1 (193 KB)
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(1)
Title
:
NATIVE TORPEDO CALIFORNICA ACETYLCHOLINESTERASE COLLECTED WITH A CUMULATED DOSE OF 800000 GY
Authors
:
J. P. Colletier, D. Bourgeois, B. Sanson, D. Fournier, J. L. Sussman, I. Silman, M. Weik
Date
:
09 May 08 (Deposition) - 22 Jul 08 (Release) - 13 Jan 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Serine Esterase, Alternative Splicing, Native Torpedo Californica Acetylcholinesterase, Neurotransmitter Degradation, Lipoprotein, Glycoprotein, Cell Junction, Synapse, Membrane, Hydrolase, Gpi-Anchor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Colletier, D. Bourgeois, B. Sanson, D. Fournier, J. L. Sussman, I. Silman, M. Weik
Shoot-And-Trap: Use Of Specific X-Ray Damage To Study Structural Protein Dynamics By Temperature- Controlled Cryo-Crystallography.
Proc. Natl. Acad. Sci. Usa V. 105 11742 2008
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3a: TRIETHYLENE GLYCOL (PGEa)
3b: TRIETHYLENE GLYCOL (PGEb)
3c: TRIETHYLENE GLYCOL (PGEc)
3d: TRIETHYLENE GLYCOL (PGEd)
3e: TRIETHYLENE GLYCOL (PGEe)
3f: TRIETHYLENE GLYCOL (PGEf)
3g: TRIETHYLENE GLYCOL (PGEg)
3h: TRIETHYLENE GLYCOL (PGEh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
PGE
8
Ligand/Ion
TRIETHYLENE GLYCOL
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:121 , TRP A:279 , PHE A:330 , TYR A:334 , PGE A:1541
BINDING SITE FOR RESIDUE PGE A1540
02
AC2
SOFTWARE
GLY A:118 , GLY A:119 , TYR A:121 , TYR A:130 , GLU A:199 , PHE A:331 , HIS A:440 , PGE A:1540 , HOH A:2158 , HOH A:2231
BINDING SITE FOR RESIDUE PGE A1541
03
AC3
SOFTWARE
LYS A:346 , ASN A:382 , ASN A:383 , GLY A:384 , HOH A:2469
BINDING SITE FOR RESIDUE PGE A1542
04
AC4
SOFTWARE
VAL A:238 , HOH A:2470
BINDING SITE FOR RESIDUE PGE A1543
05
AC5
SOFTWARE
LYS B:133 , TYR B:134
BINDING SITE FOR RESIDUE CL B1538
06
AC6
SOFTWARE
TYR B:121 , PHE B:330 , PGE B:1540
BINDING SITE FOR RESIDUE PGE B1539
07
AC7
SOFTWARE
TRP B:84 , GLY B:117 , GLY B:118 , TYR B:121 , GLU B:199 , PHE B:330 , HIS B:440 , PGE B:1539 , HOH B:2151 , HOH B:2154
BINDING SITE FOR RESIDUE PGE B1540
08
AC8
SOFTWARE
ASN B:42 , HIS B:264 , ARG B:267 , GLU B:268 , HOH B:2272 , HOH B:2491
BINDING SITE FOR RESIDUE PGE B1541
09
AC9
SOFTWARE
THR B:412 , LYS B:413 , GLY B:415 , THR B:496 , THR B:497 , HOH B:2378
BINDING SITE FOR RESIDUE PGE B1542
10
BC1
SOFTWARE
ASN A:59 , SER A:61 , HOH A:2465 , HOH A:2467
BINDING SITE FOR MONO-SACCHARIDE NAG A1537 BOUND TO ASN A 59
11
BC2
SOFTWARE
ASN A:416 , HOH A:2464 , HOH A:2466 , HOH A:2468
BINDING SITE FOR MONO-SACCHARIDE NAG A1538 BOUND TO ASN A 416
12
BC3
SOFTWARE
ASN B:59 , SER B:61 , HOH B:2479 , HOH B:2480 , HOH B:2481 , HOH B:2482 , HOH B:2483
BINDING SITE FOR MONO-SACCHARIDE NAG B1536 BOUND TO ASN B 59
13
BC4
SOFTWARE
ASN B:416 , HOH B:2485 , HOH B:2486 , HOH B:2487 , HOH B:2488
BINDING SITE FOR MONO-SACCHARIDE NAG B1537 BOUND TO ASN B 416
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CARBOXYLESTERASE_B_2 (A:92-102,B:92-102)
2: CARBOXYLESTERASE_B_1 (A:187-202,B:187-202)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYLESTERASE_B_2
PS00941
Carboxylesterases type-B signature 2.
ACES_TETCF
113-123
2
A:92-102
B:92-102
2
CARBOXYLESTERASE_B_1
PS00122
Carboxylesterases type-B serine active site.
ACES_TETCF
208-223
2
A:187-202
B:187-202
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2vt7a_ (A:)
1b: SCOP_d2vt7b_ (B:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Acetylcholinesterase-like
(219)
Protein domain
:
Acetylcholinesterase
(107)
Pacific electric ray (Torpedo californica) [TaxId: 7787]
(75)
1a
d2vt7a_
A:
1b
d2vt7b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2vt7A00 (A:4-536)
1b: CATH_2vt7B00 (B:4-535)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Pacific electric ray (Torpedo californica)
(75)
1a
2vt7A00
A:4-536
1b
2vt7B00
B:4-535
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (201 KB)
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