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2VT5
Biol. Unit 2
Info
Asym.Unit (409 KB)
Biol.Unit 1 (204 KB)
Biol.Unit 2 (204 KB)
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(1)
Title
:
FRUCTOSE-1,6-BISPHOSPHATASE(D-FRUCTOSE-1,6-BISPHOSPHATE -1-PHOSPHOHYDROLASE) (E.C.3.1.3.11) COMPLEXED WITH A DUAL BINDING AMP SITE INHIBITOR
Authors
:
A. Ruf, C. Joseph, J. Benz, B. Fol, T. Tetaz
Date
:
09 May 08 (Deposition) - 22 Jul 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Hydrolase (Phosphoric Monoester), Disease Mutation, Allosteric Enzyme, Zinc, Hydrolase, Polymorphism, Gluconeogenesis, Carbohydrate Metabolism
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
P. Hebeisen, B. Kuhn, P. Kohler, M. Gubler, W. Huber, E. Kitas, B. Schott, J. Benz, C. Joseph, A. Ruf
Allosteric Fbpase Inhibitors Gain 10(5) Times In Potency When Simultaneously Binding Two Neighboring Amp Sites.
Bioorg. Med. Chem. Lett. V. 18 4708 2008
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: 4-AMINO-N-[(2-SULFANYLETHYL)CARBAM... (ROKa)
1b: 4-AMINO-N-[(2-SULFANYLETHYL)CARBAM... (ROKb)
1c: 4-AMINO-N-[(2-SULFANYLETHYL)CARBAM... (ROKc)
1d: 4-AMINO-N-[(2-SULFANYLETHYL)CARBAM... (ROKd)
1e: 4-AMINO-N-[(2-SULFANYLETHYL)CARBAM... (ROKe)
1f: 4-AMINO-N-[(2-SULFANYLETHYL)CARBAM... (ROKf)
1g: 4-AMINO-N-[(2-SULFANYLETHYL)CARBAM... (ROKg)
1h: 4-AMINO-N-[(2-SULFANYLETHYL)CARBAM... (ROKh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ROK
4
Ligand/Ion
4-AMINO-N-[(2-SULFANYLETHYL)CARBAMOYL]BENZENESULFONAMIDE
[
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Sites
(4, 4)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
ROK E:1337 , MET G:18 , GLU G:20 , GLY G:21 , ARG G:22 , GLY G:26 , THR G:27 , GLY G:28 , GLU G:29 , LEU G:30 , THR G:31 , HOH G:2075
BINDING SITE FOR RESIDUE ROK G1337
2
AC6
SOFTWARE
VAL F:17 , GLY F:21 , ARG F:22 , GLY F:26 , THR F:27 , GLY F:28 , GLU F:29 , LEU F:30 , THR F:31 , HOH F:2015 , THR H:27 , ROK H:1337
BINDING SITE FOR RESIDUE ROK F1337
3
AC7
SOFTWARE
MET E:18 , GLY E:21 , ARG E:22 , GLY E:26 , THR E:27 , GLY E:28 , GLU E:29 , LEU E:30 , THR E:31 , HOH E:2044 , ROK G:1337
BINDING SITE FOR RESIDUE ROK E1337
4
AC8
SOFTWARE
ROK F:1337 , VAL H:17 , MET H:18 , GLU H:20 , GLY H:21 , ARG H:22 , GLY H:26 , GLY H:28 , GLU H:29 , LEU H:30 , THR H:31 , HOH H:2015
BINDING SITE FOR RESIDUE ROK H1337
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SAPs(SNPs)/Variants
(8, 32)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_002380 (G163S, chain E/F/G/H, )
2: VAR_002381 (A176D, chain E/F/G/H, )
3: VAR_038812 (F193S, chain E/F/G/H, )
4: VAR_022212 (K217K, chain E/F/G/H, )
5: VAR_022213 (F232I, chain E/F/G/H, )
6: VAR_022214 (R254L, chain E/F/G/H, )
7: VAR_038813 (P283R, chain E/F/G/H, )
8: VAR_002382 (V324A, chain E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_002380
G
164
S
F16P1_HUMAN
Disease (FBPD)
---
E/F/G/H
G
163
S
2
UniProt
VAR_002381
A
177
D
F16P1_HUMAN
Disease (FBPD)
---
E/F/G/H
A
176
D
3
UniProt
VAR_038812
F
194
S
F16P1_HUMAN
Disease (FBPD)
---
E/F/G/H
F
193
S
4
UniProt
VAR_022212
R
218
K
F16P1_HUMAN
Polymorphism
1769259
E/F/G/H
K
217
K
5
UniProt
VAR_022213
F
233
I
F16P1_HUMAN
Polymorphism
2297085
E/F/G/H
F
232
I
6
UniProt
VAR_022214
R
255
L
F16P1_HUMAN
Polymorphism
28369761
E/F/G/H
R
254
L
7
UniProt
VAR_038813
P
284
R
F16P1_HUMAN
Disease (FBPD)
---
E/F/G/H
P
283
R
8
UniProt
VAR_002382
V
325
A
F16P1_HUMAN
Polymorphism
---
E/F/G/H
V
324
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: FBPASE (E:273-285,F:273-285,G:273-285,H:27...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FBPASE
PS00124
Fructose-1-6-bisphosphatase active site.
F16P1_HUMAN
274-286
4
-
-
-
-
E:273-285
F:273-285
G:273-285
H:273-285
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2vt5a_ (A:)
1b: SCOP_d2vt5b_ (B:)
1c: SCOP_d2vt5c_ (C:)
1d: SCOP_d2vt5d_ (D:)
1e: SCOP_d2vt5e_ (E:)
1f: SCOP_d2vt5f_ (F:)
1g: SCOP_d2vt5g_ (G:)
1h: SCOP_d2vt5h_ (H:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Carbohydrate phosphatase
(140)
Superfamily
:
Carbohydrate phosphatase
(140)
Family
:
Inositol monophosphatase/fructose-1,6-bisphosphatase-like
(121)
Protein domain
:
automated matches
(20)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d2vt5a_
A:
1b
d2vt5b_
B:
1c
d2vt5c_
C:
1d
d2vt5d_
D:
1e
d2vt5e_
E:
1f
d2vt5f_
F:
1g
d2vt5g_
G:
1h
d2vt5h_
H:
[
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2vt5B01 (B:9-199)
1b: CATH_2vt5A01 (A:9-199)
1c: CATH_2vt5E01 (E:9-199)
1d: CATH_2vt5C01 (C:9-199)
1e: CATH_2vt5D01 (D:9-199)
1f: CATH_2vt5F01 (F:9-199)
1g: CATH_2vt5G01 (G:9-199)
1h: CATH_2vt5H01 (H:9-199)
2a: CATH_2vt5A02 (A:200-334)
2b: CATH_2vt5B02 (B:200-334)
2c: CATH_2vt5C02 (C:200-334)
2d: CATH_2vt5D02 (D:200-334)
2e: CATH_2vt5E02 (E:200-334)
2f: CATH_2vt5F02 (F:200-334)
2g: CATH_2vt5G02 (G:200-334)
2h: CATH_2vt5H02 (H:200-334)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Fructose-1,6-Bisphosphatase; Chain A, domain 1
(114)
Homologous Superfamily
:
Fructose-1,6-Bisphosphatase, subunit A, domain 1
(114)
Human (Homo sapiens)
(25)
1a
2vt5B01
B:9-199
1b
2vt5A01
A:9-199
1c
2vt5E01
E:9-199
1d
2vt5C01
C:9-199
1e
2vt5D01
D:9-199
1f
2vt5F01
F:9-199
1g
2vt5G01
G:9-199
1h
2vt5H01
H:9-199
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
[code=3.40.190.80, no name defined]
(109)
Human (Homo sapiens)
(25)
2a
2vt5A02
A:200-334
2b
2vt5B02
B:200-334
2c
2vt5C02
C:200-334
2d
2vt5D02
D:200-334
2e
2vt5E02
E:200-334
2f
2vt5F02
F:200-334
2g
2vt5G02
G:200-334
2h
2vt5H02
H:200-334
[
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_FBPase_2vt5H01 (H:11-334)
1b: PFAM_FBPase_2vt5H02 (H:11-334)
1c: PFAM_FBPase_2vt5H03 (H:11-334)
1d: PFAM_FBPase_2vt5H04 (H:11-334)
1e: PFAM_FBPase_2vt5H05 (H:11-334)
1f: PFAM_FBPase_2vt5H06 (H:11-334)
1g: PFAM_FBPase_2vt5H07 (H:11-334)
1h: PFAM_FBPase_2vt5H08 (H:11-334)
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(
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(
)
Clan
:
Phospoesterase
(42)
Family
:
FBPase
(32)
Homo sapiens (Human)
(9)
1a
FBPase-2vt5H01
H:11-334
1b
FBPase-2vt5H02
H:11-334
1c
FBPase-2vt5H03
H:11-334
1d
FBPase-2vt5H04
H:11-334
1e
FBPase-2vt5H05
H:11-334
1f
FBPase-2vt5H06
H:11-334
1g
FBPase-2vt5H07
H:11-334
1h
FBPase-2vt5H08
H:11-334
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Asym.Unit (409 KB)
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