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2VS5
Asym. Unit
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Asym.Unit (115 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (56 KB)
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(1)
Title
:
THE BINDING OF UDP-GALACTOSE BY AN ACTIVE SITE MUTANT OF ALPHA-1,3 GALACTOSYLTRANSFERASE (ALPHA3GT)
Authors
:
P. Tumbale, H. Jamaluddin, N. Thiyagarajan, K. Brew, K. R. Acharya
Date
:
18 Apr 08 (Deposition) - 15 Jul 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Manganese, Transferase, Glycoprotein, Metal-Binding, Active-Site Mutant, Glycosyltransferase, N-Acetyl Lactosamine, Signal-Anchor, Transmembrane, Golgi Apparatus, Gt, Udp, Membrane, Alpha3Gt, Galactose, Alpha-3Gt
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
P. Tumbale, H. Jamaluddin, N. Thiyagarajan, K. Brew, K. R. Acharya
Structural Basis Of Udp-Galactose Binding By Alpha- 1, 3-Galactosyltransferase (Alpha3Gt): Role Of Negative Charge On Aspartic Acid 316 In Structure And Activity.
Biochemistry V. 47 8711 2008
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: GALACTOSE-URIDINE-5'-DIPHOSPHATE (GDUa)
1b: GALACTOSE-URIDINE-5'-DIPHOSPHATE (GDUb)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDU
2
Ligand/Ion
GALACTOSE-URIDINE-5'-DIPHOSPHATE
2
MN
3
Ligand/Ion
MANGANESE (II) ION
3
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:225 , ASP A:227 , GDU A:1368 , HOH A:2348 , HOH A:2354
BINDING SITE FOR RESIDUE MN A1366
2
AC2
SOFTWARE
ASP A:340 , HIS A:342 , HOH A:2349
BINDING SITE FOR RESIDUE MN A1367
3
AC3
SOFTWARE
PHE A:134 , ALA A:135 , VAL A:136 , TYR A:139 , TRP A:195 , ILE A:198 , SER A:199 , ARG A:202 , ASP A:225 , VAL A:226 , ASP A:227 , HIS A:280 , ALA A:281 , ALA A:282 , TRP A:314 , HIS A:315 , ASP A:316 , GLN A:317 , VAL A:364 , ARG A:365 , MN A:1366 , HOH A:2205 , HOH A:2350 , HOH A:2351 , HOH A:2352 , HOH A:2353 , HOH A:2354
BINDING SITE FOR RESIDUE GDU A1368
4
AC4
SOFTWARE
ASP B:225 , ASP B:227 , GDU B:1361 , HOH B:2364
BINDING SITE FOR RESIDUE MN B1360
5
AC5
SOFTWARE
PHE B:134 , ALA B:135 , VAL B:136 , TYR B:139 , TRP B:195 , ILE B:198 , SER B:199 , ARG B:202 , ASP B:225 , VAL B:226 , ASP B:227 , HIS B:280 , ALA B:281 , ALA B:282 , TRP B:314 , HIS B:315 , ASP B:316 , GLN B:317 , MN B:1360 , HOH B:2217 , HOH B:2329 , HOH B:2365 , HOH B:2366 , HOH B:2367
BINDING SITE FOR RESIDUE GDU B1361
6
AC6
SOFTWARE
ARG B:194 , ASP B:197 , LYS B:306 , HOH B:2167
BINDING SITE FOR RESIDUE MPD B1362
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(3, 6)
Info
All Exons
Exon 1.7 (A:83-92 | B:82-92)
Exon 1.8 (A:92-138 | B:92-138)
Exon 1.9 (A:138-365 | B:138-359)
View:
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000016033
1
ENSBTAE00000262074
chr11:
95459665-95459416
250
GGTA1_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000016033
2
ENSBTAE00000262073
chr11:
95449479-95449385
95
GGTA1_BOVIN
-
0
0
-
-
1.3
ENSBTAT00000016033
3
ENSBTAE00000262072
chr11:
95415347-95415232
116
GGTA1_BOVIN
-
0
0
-
-
1.4
ENSBTAT00000016033
4
ENSBTAE00000262071
chr11:
95404542-95404454
89
GGTA1_BOVIN
1-27
27
0
-
-
1.5
ENSBTAT00000016033
5
ENSBTAE00000262069
chr11:
95397952-95397917
36
GGTA1_BOVIN
27-39
13
0
-
-
1.6
ENSBTAT00000016033
6
ENSBTAE00000262068
chr11:
95396284-95396219
66
GGTA1_BOVIN
39-61
23
0
-
-
1.7
ENSBTAT00000016033
7
ENSBTAE00000262067
chr11:
95395659-95395567
93
GGTA1_BOVIN
61-92
32
2
A:83-92
B:82-92
10
11
1.8
ENSBTAT00000016033
8
ENSBTAE00000004437
chr11:
95387778-95387641
138
GGTA1_BOVIN
92-138
47
2
A:92-138
B:92-138
47
47
1.9
ENSBTAT00000016033
9
ENSBTAE00000130543
chr11:
95383311-95382365
947
GGTA1_BOVIN
138-368
231
2
A:138-365
B:138-359
228
222
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2vs5a_ (A:)
1b: SCOP_d2vs5b_ (B:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
alpha-1,3-galactosyltransferase-like
(125)
Protein domain
:
alpha-1,3-galactosyltransferase catalytic domain
(22)
Cow (Bos taurus) [TaxId: 9913]
(22)
1a
d2vs5a_
A:
1b
d2vs5b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2vs5B00 (B:82-359)
1b: CATH_2vs5A00 (A:83-365)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Bovine (Bos taurus)
(20)
1a
2vs5B00
B:82-359
1b
2vs5A00
A:83-365
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_transf_6_2vs5B01 (B:82-359)
1b: PFAM_Glyco_transf_6_2vs5B02 (B:82-359)
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(
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Organisms
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(
)
Clan
:
GT-A
(172)
Family
:
Glyco_transf_6
(55)
Bos taurus (Bovine)
(15)
1a
Glyco_transf_6-2vs5B01
B:82-359
1b
Glyco_transf_6-2vs5B02
B:82-359
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Asymmetric Unit 1
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Asym.Unit (115 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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