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Asym. Unit
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Asym.Unit (105 KB)
Biol.Unit 1 (99 KB)
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(1)
Title
:
CRITICAL STRUCTURAL ROLE FOR THE PH AND C1 DOMAINS OF THE VAV1 EXCHANGE FACTOR
Authors
:
J. Rapley, V. Tybulewicz, K. Rittinger
Date
:
16 Apr 08 (Deposition) - 17 Jun 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Lipoprotein, Gtp-Binding, Metal-Binding, Proto-Oncogene, Phosphoprotein, Exchange Factor, Rac, Vav, Gtpase, Membrane, Sh2 Domain, Sh3 Domain, Methylation, Zinc-Finger, Prenylation, Guanine-Nucleotide Releasing Factor, Phorbol-Ester Binding, Adp-Ribosylation, Nucleotide-Binding, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Rapley, V. Tybulewicz, K. Rittinger
Crucial Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor.
Embo Rep. V. 9 655 2008
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS B:516 , CYS B:546 , CYS B:549 , CYS B:564
BINDING SITE FOR RESIDUE ZN B1565
2
AC2
SOFTWARE
CYS B:529 , CYS B:532 , HIS B:554 , CYS B:557
BINDING SITE FOR RESIDUE ZN B1566
[
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SAPs(SNPs)/Variants
(10, 10)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_014540 (N26D, chain A, )
02: VAR_014541 (F28L, chain A, )
03: VAR_014542 (A59T, chain A, )
04: VAR_014543 (D63G, chain A, )
05: VAR_014545 (V93G, chain A, )
06: VAR_014544 (V93I, chain A, )
07: VAR_014546 (T108I, chain A, )
08: VAR_014547 (K130R, chain A, )
09: VAR_014548 (K133E, chain A, )
10: VAR_033303 (T135I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_014540
N
26
D
RAC1_HUMAN
Polymorphism
5830
A
N
26
D
02
UniProt
VAR_014541
F
28
L
RAC1_HUMAN
Polymorphism
5832
A
F
28
L
03
UniProt
VAR_014542
A
59
T
RAC1_HUMAN
Polymorphism
5837
A
A
59
T
04
UniProt
VAR_014543
D
63
G
RAC1_HUMAN
Polymorphism
5831
A
D
63
G
05
UniProt
VAR_014545
V
93
G
RAC1_HUMAN
Polymorphism
5826
A
V
93
G
06
UniProt
VAR_014544
V
93
I
RAC1_HUMAN
Polymorphism
5825
A
V
93
I
07
UniProt
VAR_014546
T
108
I
RAC1_HUMAN
Polymorphism
5838
A
T
108
I
08
UniProt
VAR_014547
K
130
R
RAC1_HUMAN
Polymorphism
5828
A
K
130
R
09
UniProt
VAR_014548
K
133
E
RAC1_HUMAN
Polymorphism
5835
A
K
133
E
10
UniProt
VAR_033303
T
135
I
RAC1_HUMAN
Polymorphism
11540455
A
T
135
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(6, 6)
Info
All PROSITE Patterns/Profiles
1: RHO (A:1-176)
2: DH_2 (B:194-373)
3: DH_1 (B:322-347)
4: PH_DOMAIN (B:402-504)
5: ZF_DAG_PE_2 (B:515-564)
6: ZF_DAG_PE_1 (B:516-564)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RAC1_HUMAN
1-176
1
A:1-176
2
DH_2
PS50010
Dbl homology (DH) domain profile.
VAV_MOUSE
194-373
1
B:194-373
3
DH_1
PS00741
Dbl homology (DH) domain signature.
VAV_MOUSE
322-347
1
B:322-347
4
PH_DOMAIN
PS50003
PH domain profile.
VAV_MOUSE
402-504
1
B:402-504
5
ZF_DAG_PE_2
PS50081
Zinc finger phorbol-ester/DAG-type profile.
VAV_MOUSE
515-564
1
B:515-564
6
ZF_DAG_PE_1
PS00479
Zinc finger phorbol-ester/DAG-type signature.
VAV_MOUSE
516-564
1
B:516-564
[
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Exons
(6, 6)
Info
All Exons
Exon 1.1a (A:1-12)
Exon 1.3 (A:12-36)
Exon 1.5 (A:36-75)
Exon 1.7b (A:76-96)
Exon 1.8b (A:97-150)
Exon 1.9f (A:150-177)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3
3: Boundary 1.3/1.5
4: Boundary 1.5/1.7b
5: Boundary 1.7b/1.8b
6: Boundary 1.8b/1.9f
7: Boundary 1.9f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000348035
1a
ENSE00001876788
chr7:
6414154-6414401
248
RAC1_HUMAN
1-12
12
1
A:1-12
12
1.3
ENST00000348035
3
ENSE00001676753
chr7:
6426843-6426914
72
RAC1_HUMAN
12-36
25
1
A:12-36
25
1.5
ENST00000348035
5
ENSE00001643043
chr7:
6431555-6431672
118
RAC1_HUMAN
36-75
40
1
A:36-75
40
1.7b
ENST00000348035
7b
ENSE00000831659
chr7:
6439757-6439819
63
RAC1_HUMAN
76-96
21
1
A:76-96
21
1.8b
ENST00000348035
8b
ENSE00001637705
chr7:
6441499-6441658
160
RAC1_HUMAN
97-150
54
1
A:97-150
54
1.9f
ENST00000348035
9f
ENSE00001551063
chr7:
6441947-6443608
1662
RAC1_HUMAN
150-192
43
1
A:150-177
28
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2vrwa_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Human (Homo sapiens) [TaxId: 9606]
(112)
1a
d2vrwa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2vrwA00 (A:1-177)
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)
(
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(
)
Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2vrwA00
A:1-177
[
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Pfam Domains
(4, 4)
Info
all PFAM domains
1a: PFAM_C1_1_2vrwB01 (B:516-564)
2a: PFAM_Ras_2vrwA01 (A:5-177)
3a: PFAM_PH_2vrwB02 (B:403-504)
4a: PFAM_RhoGEF_2vrwB03 (B:198-372)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
C1
(13)
Family
:
C1_1
(10)
Mus musculus (Mouse)
(2)
1a
C1_1-2vrwB01
B:516-564
Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
2a
Ras-2vrwA01
A:5-177
Clan
:
PH
(111)
Family
:
PH
(71)
Mus musculus (Mouse)
(20)
3a
PH-2vrwB02
B:403-504
Clan
:
no clan defined [family: RhoGEF]
(22)
Family
:
RhoGEF
(22)
Mus musculus (Mouse)
(5)
4a
RhoGEF-2vrwB03
B:198-372
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