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2VRD
Asym. Unit
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Asym.Unit (782 KB)
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Models
(47 )
Title
:
THE STRUCTURE OF THE ZINC FINGER FROM THE HUMAN SPLICEOSOMAL PROTEIN U1C
Authors
:
Y. Muto, D. Pomeranz-Krummel, C. Oubridge, H. Hernandez, C. Robinson, D. Neuhaus, K. Nagai
Date
:
31 Mar 08 (Deposition) - 08 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (47 x)
Keywords
:
Rna-Binding Protein, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Spliceosomal Protein, Phosphoprotein, Nuclear Protein, Ribonucleoprotein, Zinc-Finger, Zinc Finger, Metal-Binding, Zinc, Rsgi, Nucleus, U1 Snrnp, Rna-Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Muto, D. Pomeranz-Krummel, C. Oubridge, H. Hernandez, C. Robinson, D. Neuhaus, K. Nagai
The Structure And Biochemical Properties Of The Human Spliceosomal Protein U1C
J. Mol. Biol. V. 341 185 2004
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
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Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:6 , CYS A:9 , HIS A:24 , HIS A:30
BINDING SITE FOR RESIDUE ZN A1062
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZF_MATRIN (A:4-36)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_MATRIN
PS50171
Zinc finger matrin-type profile.
RU1C_HUMAN
4-36
1
A:4-36
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Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:1-3)
Exon 1.2b (A:3-17)
Exon 1.3 (A:18-54)
Exon 1.4 (A:54-61)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000244520
1a
ENSE00001462178
chr6:
34725183-34725328
146
RU1C_HUMAN
1-3
3
1
A:1-3
3
1.2b
ENST00000244520
2b
ENSE00002200647
chr6:
34725689-34725731
43
RU1C_HUMAN
3-17
15
1
A:3-17
15
1.3
ENST00000244520
3
ENSE00002143688
chr6:
34730372-34730480
109
RU1C_HUMAN
18-54
37
1
A:18-54
37
1.4
ENST00000244520
4
ENSE00002143039
chr6:
34735685-34735774
90
RU1C_HUMAN
54-84
31
1
A:54-61
8
1.5
ENST00000244520
5
ENSE00002151467
chr6:
34738068-34738172
105
RU1C_HUMAN
84-119
36
0
-
-
1.7c
ENST00000244520
7c
ENSE00001196088
chr6:
34741223-34741571
349
RU1C_HUMAN
119-159
41
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2vrda1 (A:1-61)
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Protein Domains
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Organisms
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)
Class
:
Small proteins
(3458)
Fold
:
beta-beta-alpha zinc fingers
(183)
Superfamily
:
beta-beta-alpha zinc fingers
(183)
Family
:
HkH motif-containing C2H2 finger
(4)
Protein domain
:
Spliceosomal protein U1C
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2vrda1
A:1-61
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_zf_U1_2vrdA01 (A:1-38)
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Clans
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)
(
)
Clan
:
C2H2-zf
(71)
Family
:
zf-U1
(1)
Homo sapiens (Human)
(1)
1a
zf-U1-2vrdA01
A:1-38
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Chain A
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