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2VQU
Asym. Unit
Info
Asym.Unit (317 KB)
Biol.Unit 1 (159 KB)
Biol.Unit 2 (157 KB)
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(1)
Title
:
STRUCTURAL AND BIOCHEMICAL EVIDENCE FOR A BOAT-LIKE TRANSITION STATE IN BETA-MANNOSIDASES
Authors
:
L. E. Tailford, W. A. Offen, N. L. Smith, C. Dumon, C. Moreland, J. Gratien, M. P. Heck, R. V. Stick, Y. Bleriot, A. Vasella, H. J. Gilbert, G. J. Davies
Date
:
18 Mar 08 (Deposition) - 01 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Linear Free Energy Relationship, Transition State Mimic, Mannosidase, Glycoside Hydrolase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. E. Tailford, W. A. Offen, N. L. Smith, C. Dumon, C. Morland, J. Gratien, M. P. Heck, R. V. Stick, Y. Bleriot, A. Vasella, H. J. Gilbert, G. J. Davies
Structural And Biochemical Evidence For A Boat-Like Transition State In Beta-Mannosidases.
Nat. Chem. Biol. V. 4 306 2008
[
close entry info
]
Hetero Components
(4, 77)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
1j: BROMIDE ION (BRj)
1k: BROMIDE ION (BRk)
1l: BROMIDE ION (BRl)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
3a: 1,2-ETHANEDIOL (EDOa)
3aa: 1,2-ETHANEDIOL (EDOaa)
3ab: 1,2-ETHANEDIOL (EDOab)
3ac: 1,2-ETHANEDIOL (EDOac)
3ad: 1,2-ETHANEDIOL (EDOad)
3ae: 1,2-ETHANEDIOL (EDOae)
3af: 1,2-ETHANEDIOL (EDOaf)
3ag: 1,2-ETHANEDIOL (EDOag)
3ah: 1,2-ETHANEDIOL (EDOah)
3ai: 1,2-ETHANEDIOL (EDOai)
3aj: 1,2-ETHANEDIOL (EDOaj)
3ak: 1,2-ETHANEDIOL (EDOak)
3al: 1,2-ETHANEDIOL (EDOal)
3am: 1,2-ETHANEDIOL (EDOam)
3an: 1,2-ETHANEDIOL (EDOan)
3ao: 1,2-ETHANEDIOL (EDOao)
3ap: 1,2-ETHANEDIOL (EDOap)
3aq: 1,2-ETHANEDIOL (EDOaq)
3ar: 1,2-ETHANEDIOL (EDOar)
3as: 1,2-ETHANEDIOL (EDOas)
3at: 1,2-ETHANEDIOL (EDOat)
3au: 1,2-ETHANEDIOL (EDOau)
3av: 1,2-ETHANEDIOL (EDOav)
3aw: 1,2-ETHANEDIOL (EDOaw)
3ax: 1,2-ETHANEDIOL (EDOax)
3ay: 1,2-ETHANEDIOL (EDOay)
3az: 1,2-ETHANEDIOL (EDOaz)
3b: 1,2-ETHANEDIOL (EDOb)
3ba: 1,2-ETHANEDIOL (EDOba)
3bb: 1,2-ETHANEDIOL (EDObb)
3bc: 1,2-ETHANEDIOL (EDObc)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
3y: 1,2-ETHANEDIOL (EDOy)
3z: 1,2-ETHANEDIOL (EDOz)
4a: (2R,3S,4R,5R)-5-(HYDROXYMETHYL)PIP... (NOYa)
4b: (2R,3S,4R,5R)-5-(HYDROXYMETHYL)PIP... (NOYb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
12
Ligand/Ion
BROMIDE ION
2
CL
8
Ligand/Ion
CHLORIDE ION
3
EDO
55
Ligand/Ion
1,2-ETHANEDIOL
4
NOY
2
Ligand/Ion
(2R,3S,4R,5R)-5-(HYDROXYMETHYL)PIPERIDINE-2,3,4-TRIOL
[
close Hetero Component info
]
Sites
(75, 75)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
75: IC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:636 , MET A:640 , HOH A:2577
BINDING SITE FOR RESIDUE EDO A1865
02
AC2
SOFTWARE
HIS B:326 , ARG B:327 , ASN B:450 , HIS B:451 , HOH B:2257 , HOH B:2323 , HOH B:2349
BINDING SITE FOR RESIDUE EDO B1868
03
AC3
SOFTWARE
TRP A:198 , ASP A:199 , TRP A:200 , TRP A:395 , ASN A:461 , GLU A:462 , TRP A:533 , TYR A:537 , GLU A:555 , TRP A:656 , HOH A:2470 , HOH A:2578
BINDING SITE FOR RESIDUE NOY A1866
04
AC4
SOFTWARE
ASN A:293 , PRO A:294 , GLY B:266 , THR B:267
BINDING SITE FOR RESIDUE EDO A1867
05
AC5
SOFTWARE
TRP B:198 , ASP B:199 , TRP B:200 , TRP B:395 , ASN B:461 , GLU B:462 , TRP B:533 , TYR B:537 , GLU B:555 , TRP B:656 , CL B:1892 , HOH B:2485
BINDING SITE FOR RESIDUE NOY B1869
06
AC6
SOFTWARE
ASN B:261 , SER B:311 , HOH B:2601
BINDING SITE FOR RESIDUE EDO B1870
07
AC7
SOFTWARE
GLN A:365 , ASN A:648 , ASP A:649 , ILE A:659 , ASP A:660
BINDING SITE FOR RESIDUE EDO A1868
08
AC8
SOFTWARE
TRP B:525 , SER B:530 , ASN B:532 , ASP B:548 , PRO B:550 , MET B:553 , HOH B:2604
BINDING SITE FOR RESIDUE EDO B1872
09
AC9
SOFTWARE
TRP A:525 , SER A:530 , ASN A:532 , ASP A:548 , LEU A:549 , PRO A:550 , MET A:553 , HOH A:2580
BINDING SITE FOR RESIDUE EDO A1869
10
BC1
SOFTWARE
ILE A:328 , GLY A:329 , ARG A:449 , ASN A:450 , HIS A:451 , ALA A:452 , ARG A:507 , HOH A:2186
BINDING SITE FOR RESIDUE EDO A1870
11
BC2
SOFTWARE
GLN A:230 , ARG A:331 , ASP A:506 , ARG A:507 , HOH A:2268 , HOH A:2581 , HOH A:2582
BINDING SITE FOR RESIDUE EDO A1871
12
BC3
SOFTWARE
GLU A:465 , LYS A:468 , TYR A:469 , PRO A:514 , LEU A:516 , ALA A:517
BINDING SITE FOR RESIDUE EDO A1872
13
BC4
SOFTWARE
ILE A:578 , PRO A:607 , PHE A:613 , HOH A:2583
BINDING SITE FOR RESIDUE EDO A1873
14
BC5
SOFTWARE
ASN A:337 , HIS A:511 , TYR A:515 , HOH A:2584 , HOH A:2585
BINDING SITE FOR RESIDUE EDO A1874
15
BC6
SOFTWARE
ASN B:337 , HIS B:511 , TYR B:515 , HOH B:2605 , HOH B:2606
BINDING SITE FOR RESIDUE EDO B1873
16
BC7
SOFTWARE
HIS A:157 , EDO A:1887 , ASP B:88 , HIS B:157 , ARG B:161 , GLN B:162 , EDO B:1887
BINDING SITE FOR RESIDUE EDO B1874
17
BC8
SOFTWARE
GLN A:623 , ARG A:626 , HIS A:774 , PHE A:775 , HOH A:2533 , HOH A:2586 , HOH A:2587
BINDING SITE FOR RESIDUE EDO A1875
18
BC9
SOFTWARE
THR A:432 , ARG A:436 , EDO A:1894 , LEU B:126
BINDING SITE FOR RESIDUE EDO B1875
19
CC1
SOFTWARE
TYR A:443 , ARG A:446 , HOH A:2343 , HOH A:2588
BINDING SITE FOR RESIDUE EDO A1876
20
CC2
SOFTWARE
SER B:43 , GLN B:44 , SER B:45 , GLY B:46 , THR B:47 , GLU B:48 , GLU B:90
BINDING SITE FOR RESIDUE EDO B1876
21
CC3
SOFTWARE
TYR A:117 , ALA A:118 , ASP A:119 , LYS A:129 , ALA A:130 , HIS A:157 , EDO A:1894 , EDO A:1901 , HOH A:2590 , LYS B:129
BINDING SITE FOR RESIDUE EDO A1877
22
CC4
SOFTWARE
SER A:825 , ILE A:840 , THR A:842 , HOH A:2307
BINDING SITE FOR RESIDUE EDO A1878
23
CC5
SOFTWARE
ARG B:331 , ASP B:506 , ARG B:507 , HOH B:2390 , HOH B:2607 , HOH B:2608
BINDING SITE FOR RESIDUE EDO B1877
24
CC6
SOFTWARE
SER A:43 , GLN A:44 , GLY A:46 , THR A:47 , GLU A:48 , GLU A:90
BINDING SITE FOR RESIDUE EDO A1879
25
CC7
SOFTWARE
GLN B:365 , ASN B:648 , ASP B:649 , ILE B:659 , ASP B:660
BINDING SITE FOR RESIDUE EDO B1878
26
CC8
SOFTWARE
GLU B:465 , LYS B:468 , TYR B:469 , PRO B:514 , LEU B:516 , ALA B:517
BINDING SITE FOR RESIDUE EDO B1879
27
CC9
SOFTWARE
ARG B:626 , HIS B:774 , PHE B:775 , HOH B:2609 , HOH B:2610 , HOH B:2611
BINDING SITE FOR RESIDUE EDO B1880
28
DC1
SOFTWARE
PHE B:356 , ARG B:633 , ARG B:636 , ILE B:695 , SER B:696 , ASP B:697 , ASN B:733 , THR B:734
BINDING SITE FOR RESIDUE EDO B1881
29
DC2
SOFTWARE
ARG A:674 , SER A:772 , VAL A:773 , HOH A:2591 , HOH A:2592
BINDING SITE FOR RESIDUE EDO A1880
30
DC3
SOFTWARE
ASP A:603 , TYR A:604 , GLN A:623 , LYS A:778 , THR A:779
BINDING SITE FOR RESIDUE EDO A1881
31
DC4
SOFTWARE
ILE B:328 , GLY B:329 , ARG B:449 , ASN B:450 , HIS B:451 , ALA B:452 , ARG B:507 , HOH B:2186
BINDING SITE FOR RESIDUE EDO B1882
32
DC5
SOFTWARE
SER A:43 , GLN A:44 , THR A:47 , LYS A:49 , MET A:51 , LEU A:68 , HOH A:2594
BINDING SITE FOR RESIDUE EDO A1882
33
DC6
SOFTWARE
HIS B:774 , PHE B:775 , PHE B:776 , ARG B:777 , LYS B:778 , CL B:1890 , HOH B:2612
BINDING SITE FOR RESIDUE EDO B1883
34
DC7
SOFTWARE
PHE B:42 , SER B:43 , GLN B:44 , LYS B:49 , HOH B:2016 , HOH B:2613
BINDING SITE FOR RESIDUE EDO B1884
35
DC8
SOFTWARE
PRO B:212 , HOH B:2070 , HOH B:2167 , HOH B:2319 , HOH B:2620
BINDING SITE FOR RESIDUE EDO B1885
36
DC9
SOFTWARE
ARG B:823 , SER B:825 , ILE B:840 , THR B:842 , HOH B:2306
BINDING SITE FOR RESIDUE EDO B1886
37
EC1
SOFTWARE
ASP A:119 , TYR A:121 , TYR A:155 , ARG B:161 , GLN B:162 , PRO B:165 , EDO B:1874
BINDING SITE FOR RESIDUE EDO B1887
38
EC2
SOFTWARE
VAL A:372 , THR A:374 , TYR A:377 , ASN A:402 , HOH A:2595
BINDING SITE FOR RESIDUE EDO A1883
39
EC3
SOFTWARE
ILE A:107 , LYS A:142
BINDING SITE FOR RESIDUE BR A1884
40
EC4
SOFTWARE
ILE B:107 , LYS B:142
BINDING SITE FOR RESIDUE BR B1888
41
EC5
SOFTWARE
HIS A:284
BINDING SITE FOR RESIDUE BR A1885
42
EC6
SOFTWARE
GLN B:685 , ASP B:688
BINDING SITE FOR RESIDUE BR B1889
43
EC7
SOFTWARE
ASP A:88 , HIS A:157 , ARG A:161 , HOH A:2596 , EDO B:1874
BINDING SITE FOR RESIDUE EDO A1887
44
EC8
SOFTWARE
ILE B:684 , GLN B:685 , HIS B:774 , EDO B:1883 , HOH B:2503
BINDING SITE FOR RESIDUE CL B1890
45
EC9
SOFTWARE
HIS A:627 , ILE A:684 , GLN A:685 , HOH A:2487
BINDING SITE FOR RESIDUE CL A1888
46
FC1
SOFTWARE
TRP A:519 , TYR A:537 , HOH A:2355 , HOH A:2597 , HOH A:2601
BINDING SITE FOR RESIDUE EDO A1889
47
FC2
SOFTWARE
PRO A:72 , PHE A:73 , TYR A:74 , GLY A:75 , MET A:76 , GLU A:78 , ALA A:585 , HIS A:586 , TRP A:651
BINDING SITE FOR RESIDUE EDO A1904
48
FC3
SOFTWARE
ASN A:402 , HOH A:2056 , HOH A:2070
BINDING SITE FOR RESIDUE BR A1891
49
FC4
SOFTWARE
ASN A:300 , ASN A:390
BINDING SITE FOR RESIDUE BR A1895
50
FC5
SOFTWARE
PHE A:476 , THR A:477
BINDING SITE FOR RESIDUE CL A1892
51
FC6
SOFTWARE
HOH B:2561 , HOH B:2562
BINDING SITE FOR RESIDUE CL B1891
52
FC7
SOFTWARE
TRP B:200 , ILE B:363 , TRP B:395 , NOY B:1869 , HOH B:2425
BINDING SITE FOR RESIDUE CL B1892
53
FC8
SOFTWARE
PHE B:476 , THR B:477 , VAL B:480
BINDING SITE FOR RESIDUE BR B1893
54
FC9
SOFTWARE
GLN B:274 , ILE B:285 , THR B:286
BINDING SITE FOR RESIDUE EDO B1894
55
GC1
SOFTWARE
MET B:298 , TRP B:302 , ASN B:351
BINDING SITE FOR RESIDUE CL A1893
56
GC2
SOFTWARE
TYR A:117 , ASP A:131 , GLN A:162 , ARG A:436 , EDO A:1877 , HOH A:2598 , LEU B:126 , LYS B:129 , EDO B:1875
BINDING SITE FOR RESIDUE EDO A1894
57
GC3
SOFTWARE
GLN B:108
BINDING SITE FOR RESIDUE BR B1896
58
GC4
SOFTWARE
GLN A:108
BINDING SITE FOR RESIDUE BR A1896
59
GC5
SOFTWARE
ARG B:698
BINDING SITE FOR RESIDUE CL B1897
60
GC6
SOFTWARE
VAL B:372 , THR B:374 , TYR B:377 , ASN B:402 , LEU B:404 , HOH B:2618 , HOH B:2619 , HOH B:2620
BINDING SITE FOR RESIDUE EDO B1898
61
GC7
SOFTWARE
GLN A:685 , ASP A:688
BINDING SITE FOR RESIDUE BR A1897
62
GC8
SOFTWARE
ASN A:337 , LYS A:339
BINDING SITE FOR RESIDUE EDO B1900
63
GC9
SOFTWARE
ASN B:300 , TRP B:302 , PHE B:356 , ASN B:390 , ASP B:697 , HOH B:2281 , HOH B:2621
BINDING SITE FOR RESIDUE EDO B1901
64
HC1
SOFTWARE
ASN B:337 , GLU B:338 , GLU B:344 , HOH B:2606
BINDING SITE FOR RESIDUE EDO B1902
65
HC2
SOFTWARE
PHE B:542 , GLU B:543 , ASP B:603 , GLY B:624 , HOH B:2461
BINDING SITE FOR RESIDUE EDO B1903
66
HC3
SOFTWARE
HIS A:326 , HIS A:451 , HOH A:2264 , HOH A:2351
BINDING SITE FOR RESIDUE CL A1898
67
HC4
SOFTWARE
LYS A:540 , ASP A:548 , HOH A:2599 , HOH A:2600 , ASP B:340 , LYS B:341 , HOH B:2268
BINDING SITE FOR RESIDUE EDO A1899
68
HC5
SOFTWARE
VAL B:442 , TYR B:443 , ARG B:446 , HOH B:2622 , HOH B:2623 , HOH B:2624
BINDING SITE FOR RESIDUE EDO B1904
69
HC6
SOFTWARE
TYR A:469 , ASN A:518 , TRP A:519 , GLY A:520 , HOH A:2601
BINDING SITE FOR RESIDUE EDO A1900
70
HC7
SOFTWARE
LYS A:129 , HIS A:157 , GLN A:162 , EDO A:1877 , HOH A:2602 , ASP B:119 , LYS B:129 , HIS B:157 , GLN B:162
BINDING SITE FOR RESIDUE EDO A1901
71
HC8
SOFTWARE
ARG B:597 , PRO B:607 , GLU B:608 , PHE B:610 , PHE B:613 , HOH B:2625
BINDING SITE FOR RESIDUE EDO B1905
72
HC9
SOFTWARE
PRO A:786 , THR A:787 , HIS A:858 , ARG A:860
BINDING SITE FOR RESIDUE EDO A1902
73
IC1
SOFTWARE
HOH B:2267 , HOH B:2626 , HOH B:2628
BINDING SITE FOR RESIDUE EDO B1906
74
IC2
SOFTWARE
TYR B:661 , TYR B:662 , HOH B:2617
BINDING SITE FOR RESIDUE EDO B1907
75
IC3
SOFTWARE
HOH A:2579 , TRP B:519 , TRP B:533 , HOH B:2603
BINDING SITE FOR RESIDUE EDO A1903
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 10)
Info
All SCOP Domains
1a: SCOP_d2vqua4 (A:28-219)
1b: SCOP_d2vqub4 (B:28-219)
2a: SCOP_d2vqua1 (A:679-783)
2b: SCOP_d2vqub2 (B:220-330)
2c: SCOP_d2vqub3 (B:784-867)
2d: SCOP_d2vqua2 (A:220-330)
2e: SCOP_d2vqua3 (A:784-864)
2f: SCOP_d2vqub1 (B:679-783)
3a: SCOP_d2vqua5 (A:331-678)
3b: SCOP_d2vqub5 (B:331-678)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
beta-Galactosidase/glucuronidase, N-terminal domain
(49)
Protein domain
:
Beta-mannosidase
(2)
Bacteroides thetaiotaomicron [TaxId: 818]
(2)
1a
d2vqua4
A:28-219
1b
d2vqub4
B:28-219
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
beta-Galactosidase/glucuronidase domain
(79)
Family
:
beta-Galactosidase/glucuronidase domain
(49)
Protein domain
:
Beta-mannosidase, domains 2, 4 and 5
(2)
Bacteroides thetaiotaomicron [TaxId: 818]
(2)
2a
d2vqua1
A:679-783
2b
d2vqub2
B:220-330
2c
d2vqub3
B:784-867
2d
d2vqua2
A:220-330
2e
d2vqua3
A:784-864
2f
d2vqub1
B:679-783
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Five-domain beta-mannosidase, domain 3
(2)
Bacteroides thetaiotaomicron [TaxId: 818]
(2)
3a
d2vqua5
A:331-678
3b
d2vqub5
B:331-678
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CATH Domains
(0, 0)
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_2_N_2vquB01 (B:28-219)
1b: PFAM_Glyco_hydro_2_N_2vquB02 (B:28-219)
2a: PFAM_Glyco_hydro_2_C_2vquB03 (B:345-478)
2b: PFAM_Glyco_hydro_2_C_2vquB04 (B:345-478)
3a: PFAM_Glyco_hydro_2_2vquB05 (B:221-331)
3b: PFAM_Glyco_hydro_2_2vquB06 (B:221-331)
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Clan
:
GBD
(153)
Family
:
Glyco_hydro_2_N
(32)
Bacteroides thetaiotaomicron
(9)
1a
Glyco_hydro_2_N-2vquB01
B:28-219
1b
Glyco_hydro_2_N-2vquB02
B:28-219
Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_2_C
(27)
Bacteroides thetaiotaomicron
(9)
2a
Glyco_hydro_2_C-2vquB03
B:345-478
2b
Glyco_hydro_2_C-2vquB04
B:345-478
Clan
:
no clan defined [family: Glyco_hydro_2]
(31)
Family
:
Glyco_hydro_2
(31)
Bacteroides thetaiotaomicron
(9)
3a
Glyco_hydro_2-2vquB05
B:221-331
3b
Glyco_hydro_2-2vquB06
B:221-331
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