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2VQI
Biol. Unit 3
Info
Asym.Unit (163 KB)
Biol.Unit 1 (156 KB)
Biol.Unit 2 (155 KB)
Biol.Unit 3 (157 KB)
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(1)
Title
:
STRUCTURE OF THE P PILUS USHER (PAPC) TRANSLOCATION PORE
Authors
:
H. Remaut, C. Tang, N. S. Henderson, J. S. Pinkner, T. Wang, S. J. Hultgren, D. G. Thanassi, H. Li, G. Waksman
Date
:
16 Mar 08 (Deposition) - 27 May 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (2x)
Biol. Unit 3: B (2x)
Keywords
:
Transmembrane, Outer Membrane, Transport, Usher, P Pilus, Membrane, Fimbrium, Om Translocation Pore, Pilus Assembly Platform
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. Remaut, C. Tang, N. S. Henderson, J. S. Pinkner, T. Wang, S. J. Hultgren, D. G. Thanassi, G. Waksman, H. Li
Fiber Formation Across The Bacterial Outer Membrane By The Chaperone/Usher Pathway.
Cell(Cambridge, Mass. ) V. 133 640 2008
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Hetero Components
(3, 22)
Info
All Hetero Components
1a: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ea)
1b: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eb)
2a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
2b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
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No.
Name
Count
Type
Full Name
1
C8E
4
Ligand/Ion
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2
LDA
2
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
3
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU B:399 , LEU B:423 , ARG B:510 , LEU B:524
BINDING SITE FOR RESIDUE C8E B1637
2
AC2
SOFTWARE
ILE A:615 , LEU B:340 , LEU B:378
BINDING SITE FOR RESIDUE C8E B1638
3
AC3
SOFTWARE
PHE A:573 , TYR A:580 , LEU B:224 , LEU B:246 , SER B:342 , GLY B:343 , VAL B:356 , PHE B:357
BINDING SITE FOR RESIDUE LDA B1639
4
AC4
SOFTWARE
LEU A:340 , SER A:342 , GLY A:343 , VAL A:356 , PHE A:357 , PHE B:573 , TYR B:580
BINDING SITE FOR RESIDUE LDA A1638
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FIMBRIAL_USHER (B:288-298)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FIMBRIAL_USHER
PS01151
Fimbrial biogenesis outer membrane usher protein signature.
PAPC_ECOLX
315-325
2
-
B:288-298
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Usher_2vqiB01 (B:169-636)
1b: PFAM_Usher_2vqiB02 (B:169-636)
2a: PFAM_PapC_N_2vqiB03 (B:146-155)
2b: PFAM_PapC_N_2vqiB04 (B:146-155)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
MBB
(97)
Family
:
Usher
(2)
Escherichia coli
(1)
1a
Usher-2vqiB01
B:169-636
1b
Usher-2vqiB02
B:169-636
Clan
:
no clan defined [family: PapC_N]
(4)
Family
:
PapC_N
(4)
Escherichia coli
(1)
2a
PapC_N-2vqiB03
B:146-155
2b
PapC_N-2vqiB04
B:146-155
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Show PDB file:
Asym.Unit (163 KB)
Header - Asym.Unit
Biol.Unit 1 (156 KB)
Header - Biol.Unit 1
Biol.Unit 2 (155 KB)
Header - Biol.Unit 2
Biol.Unit 3 (157 KB)
Header - Biol.Unit 3
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