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2VQA
Biol. Unit 1
Info
Asym.Unit (151 KB)
Biol.Unit 1 (145 KB)
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(1)
Title
:
PROTEIN-FOLDING LOCATION CAN REGULATE MN VERSUS CU- OR ZN-BINDING. CRYSTAL STRUCTURE OF MNCA.
Authors
:
S. Tottey, K. J. Waldron, S. J. Firbank, B. Reale, C. Bessant, K. Sato, J. Gray, M. J. Banfield, C. Dennison, N. J. Robinson
Date
:
12 Mar 08 (Deposition) - 28 Oct 08 (Release) - 30 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Periplasmic Binding Protein, Metal-Binding Protein, Mn2+, Cupin, Bi-Cupin, Oxalate Decarboxylase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Tottey, K. J. Waldron, S. J. Firbank, B. Reale, C. Bessant, K. Sato, T. R. Cheek, J. Gray, M. J. Banfield, C. Dennison, N. J. Robinson
Protein-Folding Location Can Regulate Manganese-Binding Versus Copper- Or Zinc-Binding.
Nature V. 455 1138 2008
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
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Label:
No.
Name
Count
Type
Full Name
1
ACT
8
Ligand/Ion
ACETATE ION
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:101 , HIS A:103 , GLU A:108 , HIS A:147 , HOH A:2014
BINDING SITE FOR RESIDUE MN A1005
02
AC2
SOFTWARE
HIS A:283 , HIS A:285 , GLU A:290 , HIS A:329 , ACT A:1395
BINDING SITE FOR RESIDUE MN A1006
03
AC3
SOFTWARE
HIS B:101 , HIS B:103 , GLU B:108 , HIS B:147 , HOH B:2008
BINDING SITE FOR RESIDUE MN B1001
04
AC4
SOFTWARE
HIS B:283 , HIS B:285 , GLU B:290 , HIS B:329 , ACT B:1395
BINDING SITE FOR RESIDUE MN B1002
05
AC5
SOFTWARE
HIS C:101 , HIS C:103 , GLU C:108 , HIS C:147 , HOH C:2010
BINDING SITE FOR RESIDUE MN C1003
06
AC6
SOFTWARE
HIS C:283 , HIS C:285 , GLU C:290 , HIS C:329 , ACT C:1393
BINDING SITE FOR RESIDUE MN C1004
07
AC7
SOFTWARE
LEU C:253 , ILE C:272 , ARG C:280 , HIS C:283 , HIS C:285 , GLU C:290 , TYR C:350 , MN C:1004
BINDING SITE FOR RESIDUE ACT C1393
08
AC8
SOFTWARE
ILE B:272 , ARG B:280 , HIS B:283 , HIS B:285 , GLU B:290 , PHE B:345 , TYR B:350 , MN B:1002
BINDING SITE FOR RESIDUE ACT B1395
09
AC9
SOFTWARE
LEU A:253 , ILE A:272 , ARG A:280 , HIS A:283 , HIS A:285 , GLU A:290 , TYR A:350 , MN A:1006
BINDING SITE FOR RESIDUE ACT A1395
10
BC1
SOFTWARE
VAL B:133 , ASP B:134 , GLY B:137 , ASN B:238
BINDING SITE FOR RESIDUE ACT B1396
11
BC2
SOFTWARE
VAL A:133 , ASP A:134 , GLY A:137 , HIS A:237 , ASN A:238
BINDING SITE FOR RESIDUE ACT A1396
12
BC3
SOFTWARE
VAL C:133 , ASP C:134 , GLY C:137 , ASN C:238
BINDING SITE FOR RESIDUE ACT C1394
13
BC4
SOFTWARE
TRP C:47 , GLY C:48 , SER C:311 , VAL C:312
BINDING SITE FOR RESIDUE ACT C1395
14
BC5
SOFTWARE
PRO B:94 , GLY B:95 , SER B:211 , GLY B:213 , THR C:195
BINDING SITE FOR RESIDUE ACT B1397
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Cupin_1_2vqaC01 (C:237-379)
1b: PFAM_Cupin_1_2vqaC02 (C:237-379)
1c: PFAM_Cupin_1_2vqaC03 (C:237-379)
1d: PFAM_Cupin_1_2vqaC04 (C:237-379)
1e: PFAM_Cupin_1_2vqaC05 (C:237-379)
1f: PFAM_Cupin_1_2vqaC06 (C:237-379)
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Clans
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Clan
:
Cupin
(179)
Family
:
Cupin_1
(15)
Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)
(1)
1a
Cupin_1-2vqaC01
C:237-379
1b
Cupin_1-2vqaC02
C:237-379
1c
Cupin_1-2vqaC03
C:237-379
1d
Cupin_1-2vqaC04
C:237-379
1e
Cupin_1-2vqaC05
C:237-379
1f
Cupin_1-2vqaC06
C:237-379
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Asymmetric Unit 1
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Asym.Unit (151 KB)
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