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2VPQ
Asym. Unit
Info
Asym.Unit (164 KB)
Biol.Unit 1 (158 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM S. AUREUS COMPLEXED WITH AMPPNP
Authors
:
I. Mochalkin
Date
:
03 Mar 08 (Deposition) - 09 Sep 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Bacteria, Atp-Grasp Domain, Biotin Carboxylase, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Mochalkin, J. R. Miller, A. Evdokimov, S. Lightle, C. Yan, C. K. Stover, G. L. Waldrop
Structural Evidence For Substrate-Induced Synergism And Half-Sites Reactivity In Biotin Carboxylase.
Protein Sci. V. 17 1706 2008
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
CL
2
Ligand/Ion
CHLORIDE ION
3
MG
4
Ligand/Ion
MAGNESIUM ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS B:115 , ILE B:155 , LYS B:157 , GLY B:161 , GLY B:162 , GLY B:163 , GLY B:164 , ILE B:167 , GLU B:199 , LYS B:200 , PHE B:201 , ILE B:202 , HIS B:207 , GLN B:231 , MET B:234 , GLU B:274 , ILE B:276 , MET B:287 , GLU B:288 , ASN B:290 , MG B:1451 , MG B:1452 , HOH B:2155 , HOH B:2243 , HOH B:2393 , HOH B:2394 , HOH B:2397 , HOH B:2398
BINDING SITE FOR RESIDUE ANP B1450
2
AC2
SOFTWARE
LYS A:115 , ILE A:155 , LYS A:157 , GLY A:161 , GLY A:162 , GLY A:163 , GLY A:164 , ILE A:167 , GLU A:199 , LYS A:200 , PHE A:201 , ILE A:202 , HIS A:207 , GLN A:231 , GLU A:274 , ILE A:276 , MET A:287 , GLU A:288 , ASN A:290 , MG A:1450 , MG A:1451 , HOH A:2172 , HOH A:2180 , HOH A:2266 , HOH A:2416 , HOH A:2417
BINDING SITE FOR RESIDUE ANP A1449
3
AC3
SOFTWARE
GLU B:274 , GLU B:288 , ANP B:1450 , HOH B:2398
BINDING SITE FOR RESIDUE MG B1451
4
AC4
SOFTWARE
GLU A:274 , GLU A:288 , ANP A:1449 , HOH A:2417
BINDING SITE FOR RESIDUE MG A1450
5
AC5
SOFTWARE
GLU B:288 , ASN B:290 , ANP B:1450 , HOH B:2155 , HOH B:2243
BINDING SITE FOR RESIDUE MG B1452
6
AC6
SOFTWARE
GLU A:288 , ASN A:290 , ANP A:1449 , HOH A:2172 , HOH A:2266
BINDING SITE FOR RESIDUE MG A1451
7
AC7
SOFTWARE
ARG A:292 , GLN A:294 , VAL A:295 , HOH A:2270
BINDING SITE FOR RESIDUE CL A1452
8
AC8
SOFTWARE
ARG B:292 , GLN B:294 , VAL B:295 , HOH B:2247
BINDING SITE FOR RESIDUE CL B1453
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2vpqa3 (A:330-448)
1b: SCOP_d2vpqb3 (B:330-449)
2a: SCOP_d2vpqa2 (A:115-329)
2b: SCOP_d2vpqb2 (B:115-329)
3a: SCOP_d2vpqa1 (A:2-114)
3b: SCOP_d2vpqb1 (B:2-114)
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Classes
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)
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Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Rudiment single hybrid motif
(69)
Family
:
automated matches
(17)
Protein domain
:
automated matches
(17)
Staphylococcus aureus [TaxId: 1280]
(1)
1a
d2vpqa3
A:330-448
1b
d2vpqb3
B:330-449
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
automated matches
(42)
Protein domain
:
automated matches
(42)
Staphylococcus aureus [TaxId: 1280]
(3)
2a
d2vpqa2
A:115-329
2b
d2vpqb2
B:115-329
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
automated matches
(45)
Protein domain
:
automated matches
(45)
Staphylococcus aureus [TaxId: 1280]
(3)
3a
d2vpqa1
A:2-114
3b
d2vpqb1
B:2-114
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2vpqA03 (A:130-201)
1b: CATH_2vpqB03 (B:130-201)
2a: CATH_2vpqA01 (A:2-84)
2b: CATH_2vpqB01 (B:2-84)
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Homologous Superfamilies
(
)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
ATP-grasp fold, A domain
(109)
Staphylococcus aureus. Organism_taxid: 1280.
(1)
1a
2vpqA03
A:130-201
1b
2vpqB03
B:130-201
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.20, no name defined]
(85)
Staphylococcus aureus. Organism_taxid: 1280.
(1)
2a
2vpqA01
A:2-84
2b
2vpqB01
B:2-84
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (164 KB)
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Header - Biol.Unit 1
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