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2VPF
Biol. Unit 3
Info
Asym.Unit (143 KB)
Biol.Unit 1 (37 KB)
Biol.Unit 2 (38 KB)
Biol.Unit 3 (38 KB)
Biol.Unit 4 (37 KB)
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(1)
Title
:
VASCULAR ENDOTHELIAL GROWTH FACTOR REFINED TO 1.93 ANGSTROMS RESOLUTION
Authors
:
Y. A. Muller, A. M. De Vos
Date
:
29 Jul 97 (Deposition) - 29 Jul 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Growth Factor, Cystine Knot, Angiogenesis, Vasculogenesis
(Keyword Search:
[
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)
Reference
:
Y. A. Muller, H. W. Christinger, B. A. Keyt, A. M. De Vos
The Crystal Structure Of Vascular Endothelial Growth Factor (Vegf) Refined To 1. 93 A Resolution: Multiple Copy Flexibility And Receptor Binding.
Structure V. 5 1325 1997
(for further references see the
PDB file header
)
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Hetero Components
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Sites
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PROSITE Patterns/Profiles
(2, 4)
Info
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1: PDGF_2 (E:13-108,F:13-108)
2: PDGF_1 (E:49-61,F:49-61)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDGF_2
PS50278
Platelet-derived growth factor (PDGF) family profile.
VEGFA_HUMAN
39-135
2
-
-
-
E:13-108
F:13-108
-
2
PDGF_1
PS00249
Platelet-derived growth factor (PDGF) family signature.
VEGFA_HUMAN
75-87
2
-
-
-
-
E:49-61
F:49-61
-
-
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Exons
(0, 0)
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2vpfa_ (A:)
1b: SCOP_d2vpfg_ (G:)
1c: SCOP_d2vpfh_ (H:)
1d: SCOP_d2vpfb_ (B:)
1e: SCOP_d2vpfc_ (C:)
1f: SCOP_d2vpfd_ (D:)
1g: SCOP_d2vpfe_ (E:)
1h: SCOP_d2vpff_ (F:)
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Class
:
Small proteins
(3458)
Fold
:
Cystine-knot cytokines
(124)
Superfamily
:
Cystine-knot cytokines
(124)
Family
:
Platelet-derived growth factor-like
(26)
Protein domain
:
Vascular endothelial growth factor, VEGF
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d2vpfa_
A:
1b
d2vpfg_
G:
1c
d2vpfh_
H:
1d
d2vpfb_
B:
1e
d2vpfc_
C:
1f
d2vpfd_
D:
1g
d2vpfe_
E:
1h
d2vpff_
F:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2vpfA00 (A:13-109)
1b: CATH_2vpfG00 (G:13-107)
1c: CATH_2vpfH00 (H:14-107)
1d: CATH_2vpfC00 (C:14-106)
1e: CATH_2vpfB00 (B:13-108)
1f: CATH_2vpfE00 (E:13-108)
1g: CATH_2vpfF00 (F:13-108)
1h: CATH_2vpfD00 (D:13-107)
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Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Cystine Knot Cytokines, subunit B
(102)
Homologous Superfamily
:
Cystine-knot cytokines
(102)
Human (Homo sapiens)
(84)
1a
2vpfA00
A:13-109
1b
2vpfG00
G:13-107
1c
2vpfH00
H:14-107
1d
2vpfC00
C:14-106
1e
2vpfB00
B:13-108
1f
2vpfE00
E:13-108
1g
2vpfF00
F:13-108
1h
2vpfD00
D:13-107
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_PDGF_2vpfH01 (H:26-104)
1b: PFAM_PDGF_2vpfH02 (H:26-104)
1c: PFAM_PDGF_2vpfH03 (H:26-104)
1d: PFAM_PDGF_2vpfH04 (H:26-104)
1e: PFAM_PDGF_2vpfH05 (H:26-104)
1f: PFAM_PDGF_2vpfH06 (H:26-104)
1g: PFAM_PDGF_2vpfH07 (H:26-104)
1h: PFAM_PDGF_2vpfH08 (H:26-104)
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Clan
:
Cystine-knot
(56)
Family
:
PDGF
(19)
Homo sapiens (Human)
(17)
1a
PDGF-2vpfH01
H:26-104
1b
PDGF-2vpfH02
H:26-104
1c
PDGF-2vpfH03
H:26-104
1d
PDGF-2vpfH04
H:26-104
1e
PDGF-2vpfH05
H:26-104
1f
PDGF-2vpfH06
H:26-104
1g
PDGF-2vpfH07
H:26-104
1h
PDGF-2vpfH08
H:26-104
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Show PDB file:
Asym.Unit (143 KB)
Header - Asym.Unit
Biol.Unit 1 (37 KB)
Header - Biol.Unit 1
Biol.Unit 2 (38 KB)
Header - Biol.Unit 2
Biol.Unit 3 (38 KB)
Header - Biol.Unit 3
Biol.Unit 4 (37 KB)
Header - Biol.Unit 4
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